Description
We present a novel use of normalized pointwise mutual information (NPMI) to mine biomedical literature for gene associations with biological concepts as represented by Medical Subject Headings (MeSH terms) in PubMed.
This dataset is associated with the following publication:
Watford, S., R. Grashow, V. De La Rosa, R. Rudel, K. Paul-Friedman, and M. Martin. Novel application of normalized pointwise mutual information (NPMI) to mine biomedical literature for gene sets associated with disease: Use case in breast carcinogenesis. Computational Toxicology. Elsevier B.V., Amsterdam, NETHERLANDS, 7: 46-57, (2018).
Resources
| Name | Format | Description | Link |
|---|---|---|---|
| https://doi.org/10.23645/epacomptox.6635564 | Unknown | Open resource | |
| https://gaftp.epa.gov/COMPTOX/NCCT_Publication_Data/Watford/Novel_application__NPMI_Biomedlit_genesets_usecase_breast_cancer | Unknown | Open resource | |
| https://github.com/USEPA/CompTox-HTTr-EMCON | Unknown | Open resource |