The genome of cowpea (Vigna unguiculata [L.] Walp.): Insertion and Deletion Variations

Description

Insertion (INS) and deletion (DEL) variations identified by BreakDancer (Chen et al. 2009) in a set of 36 diverse cowpea accessions. Columns 2 -4 and 5-7 specify the coordinates of the two breakpoints. The orientation is a string that records the number of reads mapped to the (+) or (-) strand in the anchoring regions. The confidence score associated with the prediction is also shown.

Resources

Name Format Description Link
8 https://data.usaid.gov/api/views/2rm6-zbwh/rows.csv?accessType=DOWNLOAD
40 https://data.usaid.gov/api/views/2rm6-zbwh/rows.rdf?accessType=DOWNLOAD
23 https://data.usaid.gov/api/views/2rm6-zbwh/rows.json?accessType=DOWNLOAD
55 https://data.usaid.gov/api/views/2rm6-zbwh/rows.xml?accessType=DOWNLOAD

Tags

  • feed-the-future
  • nutritional-security
  • agriculture
  • snp-genotyping
  • innovation-lab
  • genome-sequence
  • cowpea
  • resilience
  • synteny
  • genetic-mapping
  • food-security

Topics

Categories