Description
The files in this data release are the processed DNA consensus sequence alignment files for the chelonid herpesvirus 5 (ChHV-5) genome plus 66 open reading frames representing protien-coding genes. DNA was extracted from tumor biopsies from green sea turtles (Chelonias mydas) with fibropapillomatosis sampled from Florida and Hawaii coastal waters. We used high-throughput short-read sequencing (Illumina MiSeq and Ion Torrent Personal Genome Machine) of long-range PCR products amplified from tumor tissue using primers designed from the single available ChHV5 reference genome from a Hawaii green sea turtle. The raw sequence data is available at the NCBI Sequence Read Archive under bioproject number PRJNA360405, including biosample numbers SAMN06210144- SAMN06210150.
Resources
| Name | Format | Description | Link |
|---|---|---|---|
| Original Metadata | XML | The metadata original format | Open resource |
| Digital Data | XML | Landing page for access to the data | Open resource |
Tags
- biota
- class-reptilia
- disease-research
- dna-sequencing
- earth-oceans-atlantic-north-atlantic
- earth-oceans-pacific
- endangered-species
- family-cheloniidae
- family-herpesviridae
- florida-indian-river-county-martin-county-sarasota
- genetic-diversity
- genetics
- genus-chelonia
- genus-scutavirus
- green-sea-turtle
- hawaii-hilo
- hawaii-maui-county-2
- hawaii-oahu-honolulu-county
- infrakingdom-deuterostomia
- infraphylum-gnathostomata
- kingdom-animalia
- marine-biology
- order-herpesvirales
- order-testudines
- phylum-chordata
- polymerase-chain-reaction
- reptiles
- sea-turtles
- species-chelonia-mydas
- species-chelonid-alphaherpesvirus-5
- subfamily-alpheherpesvirinae
- subfamily-cheloniinae
- subkingdom-bilateria
- suborder-cryptodira
- subphylum-vertebrata
- superclass-tetrapoda
- superfamily-chelonioidea
- usgs-59c01bede4b091459a5e0aaa
- virology
- viruses