Software and Data associated with "Binding, Brightness, or Noise? Extracting Temperature-dependent Properties of Dye Bound to DNA"

Description

The purpose of this software and data is to enable reproduction and facilitate extension of the computational results associated with the following referenceDeJaco, R. F.; Majikes, J. M.; Liddle, J. A.; Kearsley, A. J. Binding, Brightness, or Noise? Extracting Temperature-dependent Properties of Dye Bound to DNA. Biophysical Journal, 2023, https://doi.org/10.1016/j.bpj.2023.03.002.The software and data can also be found at https://github.com/usnistgov/dye_dna_plates.

Resources

Name Format Description Link
57 dye_dna_plates-1.0.1.zip https://data.nist.gov/od/ds/mds2-2762/dye_dna_plates-1.0.1.zip
57 This compressed file contains documentation of this software and dataset in the HTML format. It can be viewed by downloading, extracting, and opening the index.html file with a browser. https://data.nist.gov/od/ds/mds2-2762/singlehtml.zip
57 This compressed folder contains all software and data required to reproduce the manuscript. The version is 0.7. https://data.nist.gov/od/ds/mds2-2762/DyeDNAPlates_v0.7.zip
19 Version 1.0.1 of code/software. https://data.nist.gov/od/ds/mds2-2762/dye_dna_plates-1.0.1.tar.gz
5 Step-by-step instructions enabling reproduction of paper https://data.nist.gov/od/ds/mds2-2762/REPRODUCEME.md

Tags

  • numerical-optimization
  • fluorescence
  • mathematical-modeling
  • fluorescence-data
  • intercalating-dyes
  • python
  • total-least-squares
  • noise-removal

Topics

Categories