Sequencing Data Set of Sediment Layers
Description
A table (DP_SRA.xlsx) contains rows as sample and columns as entries representing the biosample accession number (NCBI), collection (date), library strategy, target (source), and sequencing (technology) for each individual sample.
The zip file (Genome_Set01.zip) contain nine (9) fasta file (DP_bin_02.fasta, DP_bin_04.fasta, DP_bin_09.fasta, DP_bin_10.fasta, DP_bin_14.fasta, DP_bin_15.fasta, DP_bin_16a.fasta, DP_bin_20.fasta, DP_bin_23.fasta) with the contig sequences (i.e. binning) for each metagenome-assembled genomes (MAGs).
These data are available from the NCBI Sequence Read Archive (SRA) under the BioProject (https://www.ncbi.nlm.nih.gov/bioproject) with accession number PRJNA646252 and the following BioSample numbers: SAMN15536103 to SAMN15536108.
This dataset is associated with the following publication:
Gomez-Alvarez, V., H. Liu, J. Pressman, and D. Wahman. Metagenomic Profile of Microbial Communities in a Drinking Water Storage Tank Sediment after Sequential Exposure to Monochloramine, Free Chlorine, and Monochloramine. ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 1(5): 1283-1294, (2021).
Resources
| Name |
Format |
Description |
Link |
|
53 |
DP_SRA.xlsx |
https://pasteur.epa.gov/uploads/10.23719/1519300/DP_SRA.xlsx |
|
57 |
DP_bin.zip |
https://pasteur.epa.gov/uploads/10.23719/1519300/DP_bin.zip |
|
0 |
|
https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA646252 |
Tags
- microbiome
- storage-tank-sediment
- denitrification
- metagenome-assembled-genome
- drinking-water
- contigs
- metagenomes
- nitrification
- waterborne-pathogens