Sequence-based allelic variations and frequencies for 22 autosomal STR loci in the Lebanese population - Supplementary material

Description

This data repository is meant to provide the supplementary files, tables, and figures included in the peer-reviewed research article entitled: "Sequence-based allelic variations and frequencies for 22 autosomal STR Loci in the Lebanese population". The article can be found at the following link (https://doi.org/10.1016/j.fsigen.2023.102872) and describes the sequencing of the 22 autosomal Short Tandem Repeat (aSTR) loci, using the PowerSeq 46GY System Prototype, in 195 individuals of self-reported Lebanese admixed ancestry. The supplemental files contain the sequence strings for each allele at each autosomal STR locus, length- and sequence- based allelic frequencies, quality control metrics for the sequencing runs, flanking region polymorphisms, as well as population and forensic genetic statistics. Any future changes to the supplements will be listed in the "Change Log" tab within each spreadsheet.

Resources

Name Format Description Link
Text File Text 2867_README.txt Open resource
MDS plot for Lebanese and four U.S. populations Powerpoint Supplementary%20Figure%201.pptx Open resource
Population tree for Lebanese and four U.S. populations Powerpoint Supplementary%20Figure%202.pptx Open resource
Lebanese population structure using unsupervised clustering Powerpoint Supplementary%20Figure%203.pptx Open resource
STRait Razor v3 configuration file for the 22 autosomal STRs identified by the PowerSeq 46GY assay Binary Open resource
Supplementary File 1 - STRait Razor v3 Config Binary STRait Razor v3 configuration file for the 22 autosomal Open resource
GRCh38 coordinate ranges used to adjust the sequences identified by both PowerSeq 46GY and ForenSeq Signature kits Text Supplementary%20File%202.txt Open resource
Supplementary File 2 - Sequence Ranges Text Sequence ranges for the comparison of the PowerSeq 46GY kit to the ForenSeq Signature kit Open resource
Supplementary Table 10. Linkage disequilibrium XLS Supplementary%20Table%2010.xlsx Open resource
Linkage disequilibrium XLS Supplementary%20Table%2010.xlsx Open resource
AMOVA test among and within the 5 studied populations XLS Supplementary%20Table%2011.xlsx Open resource
Locus-by-locus FST and p-values XLS Supplementary%20Table%2012.xlsx Open resource
Pairwise FST estimates and permutation test across five populations XLS Supplementary%20Table%2013.xlsx Open resource
Supplementary Table 1. Quality control metrics for the sequencing runs XLS Supplementary%20Table%201.xlsx Open resource
Quality control metrics for the sequencing runs XLS Supplementary%20Table%201.xlsx Open resource
Average coverage of allelic sequences XLS Supplementary%20Table%202.xlsx Open resource
Average Hb across sequencing runs XLS Supplementary%20Table%203.xlsx Open resource
Supplementary Table 3. Average Hb across sequencing runs XLS Supplementary%20Table%203.xlsx Open resource
Supplementary Table 4. Sequence-based allelic frequencies XLS Supplementary%20Table%204.xlsx Open resource
Sequence-based allelic frequencies XLS Supplementary%20Table%204.xlsx Open resource
Supplementary Table 5. Allelic gains by sequencing XLS Supplementary%20Table%205.xlsx Open resource
Allelic gains by sequencing XLS Supplementary%20Table%205.xlsx Open resource
Supplementary Table 6. Flanking region polymorphisms XLS Supplementary%20Table%206.xlsx Open resource
Flanking region polymorphisms XLS Supplementary%20Table%206.xlsx Open resource
Supplementary Table 7. Length-based allelic frequencies XLS Supplementary%20Table%207.xlsx Open resource
Length-based allelic frequencies XLS Supplementary%20Table%207.xlsx Open resource
Supplementary Table 8. Polymorphism Information Content, Power of discrimination, and Power of exclusion XLS Supplementary%20Table%208.xlsx Open resource
Polymorphism Information Content, Power of discrimination, and Power of exclusion XLS Supplementary%20Table%208.xlsx Open resource
Match probability and Typical Paternity Index XLS Supplementary%20Table%209.xlsx Open resource
Supplementary Table 9. Match probability and Typical Paternity Index XLS Supplementary%20Table%209.xlsx Open resource

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