Description
This data repository is meant to provide the supplementary files, tables, and figures included in the peer-reviewed research article entitled: "Sequence-based allelic variations and frequencies for 22 autosomal STR Loci in the Lebanese population". The article can be found at the following link (https://doi.org/10.1016/j.fsigen.2023.102872) and describes the sequencing of the 22 autosomal Short Tandem Repeat (aSTR) loci, using the PowerSeq 46GY System Prototype, in 195 individuals of self-reported Lebanese admixed ancestry. The supplemental files contain the sequence strings for each allele at each autosomal STR locus, length- and sequence- based allelic frequencies, quality control metrics for the sequencing runs, flanking region polymorphisms, as well as population and forensic genetic statistics. Any future changes to the supplements will be listed in the "Change Log" tab within each spreadsheet.
Resources
| Name | Format | Description | Link |
|---|---|---|---|
| Text File | Text | 2867_README.txt | Open resource |
| MDS plot for Lebanese and four U.S. populations | Powerpoint | Supplementary%20Figure%201.pptx | Open resource |
| Population tree for Lebanese and four U.S. populations | Powerpoint | Supplementary%20Figure%202.pptx | Open resource |
| Lebanese population structure using unsupervised clustering | Powerpoint | Supplementary%20Figure%203.pptx | Open resource |
| STRait Razor v3 configuration file for the 22 autosomal STRs identified by the PowerSeq 46GY assay | Binary | Open resource | |
| Supplementary File 1 - STRait Razor v3 Config | Binary | STRait Razor v3 configuration file for the 22 autosomal | Open resource |
| GRCh38 coordinate ranges used to adjust the sequences identified by both PowerSeq 46GY and ForenSeq Signature kits | Text | Supplementary%20File%202.txt | Open resource |
| Supplementary File 2 - Sequence Ranges | Text | Sequence ranges for the comparison of the PowerSeq 46GY kit to the ForenSeq Signature kit | Open resource |
| Supplementary Table 10. Linkage disequilibrium | XLS | Supplementary%20Table%2010.xlsx | Open resource |
| Linkage disequilibrium | XLS | Supplementary%20Table%2010.xlsx | Open resource |
| AMOVA test among and within the 5 studied populations | XLS | Supplementary%20Table%2011.xlsx | Open resource |
| Locus-by-locus FST and p-values | XLS | Supplementary%20Table%2012.xlsx | Open resource |
| Pairwise FST estimates and permutation test across five populations | XLS | Supplementary%20Table%2013.xlsx | Open resource |
| Supplementary Table 1. Quality control metrics for the sequencing runs | XLS | Supplementary%20Table%201.xlsx | Open resource |
| Quality control metrics for the sequencing runs | XLS | Supplementary%20Table%201.xlsx | Open resource |
| Average coverage of allelic sequences | XLS | Supplementary%20Table%202.xlsx | Open resource |
| Average Hb across sequencing runs | XLS | Supplementary%20Table%203.xlsx | Open resource |
| Supplementary Table 3. Average Hb across sequencing runs | XLS | Supplementary%20Table%203.xlsx | Open resource |
| Supplementary Table 4. Sequence-based allelic frequencies | XLS | Supplementary%20Table%204.xlsx | Open resource |
| Sequence-based allelic frequencies | XLS | Supplementary%20Table%204.xlsx | Open resource |
| Supplementary Table 5. Allelic gains by sequencing | XLS | Supplementary%20Table%205.xlsx | Open resource |
| Allelic gains by sequencing | XLS | Supplementary%20Table%205.xlsx | Open resource |
| Supplementary Table 6. Flanking region polymorphisms | XLS | Supplementary%20Table%206.xlsx | Open resource |
| Flanking region polymorphisms | XLS | Supplementary%20Table%206.xlsx | Open resource |
| Supplementary Table 7. Length-based allelic frequencies | XLS | Supplementary%20Table%207.xlsx | Open resource |
| Length-based allelic frequencies | XLS | Supplementary%20Table%207.xlsx | Open resource |
| Supplementary Table 8. Polymorphism Information Content, Power of discrimination, and Power of exclusion | XLS | Supplementary%20Table%208.xlsx | Open resource |
| Polymorphism Information Content, Power of discrimination, and Power of exclusion | XLS | Supplementary%20Table%208.xlsx | Open resource |
| Match probability and Typical Paternity Index | XLS | Supplementary%20Table%209.xlsx | Open resource |
| Supplementary Table 9. Match probability and Typical Paternity Index | XLS | Supplementary%20Table%209.xlsx | Open resource |