Rodent Research-1 (RR1) NASA Validation Flight: Mouse kidney transcriptomic proteomic and epigenomic data

Description

NASA s Rodent Research (RR) project is playing a critical role in advancing biomedical research on the physiological effects of space environments. Due to the limited resources for conducting biological experiments aboard the International Space Station (ISS) it is imperative to use crew time efficiently while maximizing high-quality science return. NASA s GeneLab project has as its primary objectives to 1) further increase the value of these experiments using a multi-omics systems biology-based approach and 2) disseminate these data without restrictions to the scientific community. The current investigation assessed viability of RNA DNA and protein extracted from archived RR-1 tissue samples for epigenomic transcriptomic and proteomic assays. During the first RR spaceflight experiment a variety of tissue types were harvested from subjects snap-frozen or RNAlater-preserved and then stored at least a year at -80C after return to Earth. They were then prioritized for this investigation based on likelihood of significant scientific value for spaceflight research. All tissues were made available to GeneLab through the bio-specimen sharing program managed by the Ames Life Science Data Archive and included mouse adrenal glands quadriceps gastrocnemius tibialis anterior extensor digitorum longus soleus eye and kidney. We report here protocols for and results of these tissue extractions and thus the feasibility and value of these kinds of omics analyses. In addition to providing additional opportunities for investigation of spaceflight effects on the mouse transcriptome and proteome in new kinds of tissues our results may also be of value to program managers for the prioritization of ISS crew time for rodent research activities.

Resources

Name Format Description Link
21 GeneLab Study Page https://genelab-data.ndc.nasa.gov/genelab/accession/GLDS-102
21 GeneLab Study Page https://genelab-data.ndc.nasa.gov/genelab/accession/GLDS-36
5 http://www.ebi.ac.uk%2Farrayexpress%2Fexperiments%2FE-GEOD-38836%2F
5 https://lsda.jsc.nasa.gov%2FExperiment%2Fexper%2F1391
5 https://osdr.nasa.gov%2Fbio%2Frepo%2Fdata%2Fmissions%2FExpedition%252014
5 http://purl.bioontology.org%2Fontology%2FNCBITAXON%2F9606
5 https://osdr.nasa.gov%2Fbio%2Frepo%2Fdata%2Fstudies%2FOSD-13
21 GeneLab Study Page https://genelab-data.ndc.nasa.gov/genelab/accession/GLDS-102
21 GeneLab Study Page https://genelab-data.ndc.nasa.gov/genelab/accession/GLDS-36

Tags

  • sample-collection
  • protein-extraction
  • epitranscriptomics
  • nucleic-acid-extraction
  • rna-library-construction
  • proteomic-labeling
  • microgravity
  • animal-and-tissue-sampling
  • labeling
  • library-construction
  • dna-library-construction
  • nucleic-acid-sequencing
  • mass-spectrometry
  • 5mc-total-rna-methylation-analysis

Topics

Categories