Retrovirus Resources

Description

Information about retroviruses and specialized tools for the analysis of retroviral proteins and genomes. The tools on this page aid in the identification, study and analysis of retroviral genomes and proteins. For instance, the HIV, human interaction database catalogs and organizes published data in peer-reviewed journals regarding HIV-1 and human protein interactions. Several links external to NCBI are also included for the purposes of education, research and health-related matters. These include links to the CDC, the Retroviruses textbook and other informative sites.

Resources

Name Format Description Link
21 https://www.ncbi.nlm.nih.gov/genomes/GenomesGroup.cgi?taxid=11632
21 https://www.ncbi.nlm.nih.gov/genome/?term=retroviridae
21 https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=11632&keep=1&lvl=6&filter=genome_filter&p=genome
21 This tool helps identify the genotype of a viral sequence. A window is slid along the query sequence and each window is compared by BLAST to each of the reference sequences for a particular virus. This approach is especially useful for the analysis of recombinant sequences https://www.ncbi.nlm.nih.gov/projects/genotyping/formpage.cgi
21 https://blast.ncbi.nlm.nih.gov/Blast.cgi?ALIGNMENTS=50&ALIGNMENT_VIEW=Pairwise&AUTO_FORMAT=Semiauto&CLIENT=web&DATABASE=nr&DESCRIPTIONS=250&EQ_MENU=All+organisms&EQ_OP=AND&EQ_TEXT=txid11632%5Borgn%5D&EXPECT=10&FILTER=L&FORMAT_BLOCK_ON_RESPAGE=None&FORMAT_EQ_MENU=All+organisms&FORMAT_EQ_OP=AND&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&GET_SEQUENCE=on&HITLIST_SIZE=250&LAYOUT=TwoWindows&MASK_CHAR=2&MASK_COLOR=1&MYNCBI_USER=4345656082&NEW_VIEW=on&NUM_OVERVIEW=100&PAGE=Nucleotides&PROGRAM=blastn&REPEATS=repeat_9606&SEARCH_NAME=bn&SERVICE=plain&SET_DEFAULTS=Yes&SET_DEFAULTS.x=31&SET_DEFAULTS.y=11&SHOW_LINKOUT=on&SHOW_OVERVIEW=on&USER_TYPE=2&WORD_SIZE=11&dbtype=hc&END_OF_HTTPGET=Yes
21 Information about known interactions of HIV-1 proteins with proteins from human hosts. It provides annotated bibliographies of published reports of protein interactions, with links to the corresponding PubMed records and sequence data. https://www.ncbi.nlm.nih.gov/genome/viruses/retroviruses/hiv-1/interactions/
21 https://blast.ncbi.nlm.nih.gov/Blast.cgi?ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&AUTO_FORMAT=Semiauto&CDD_SEARCH=on&CLIENT=web&COMPOSITION_BASED_STATISTICS=1&DATABASE=nr&DESCRIPTIONS=500&EQ_MENU=All+organisms&EQ_OP=AND&EQ_TEXT=txid11632%5Borgn%5D&EXPECT=10&FORMAT_BLOCK_ON_RESPAGE=None&FORMAT_EQ_MENU=All+organisms&FORMAT_EQ_OP=AND&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&GAPCOSTS=11+1&GET_SEQUENCE=on&HITLIST_SIZE=500&I_THRESH=0.005&LAYOUT=TwoWindows&MASK_CHAR=2&MASK_COLOR=1&MATRIX_NAME=BLOSUM62&MYNCBI_USER=4345656082&NCBI_GI=on&NUM_OVERVIEW=100&PAGE=Proteins&PROGRAM=blastp&SEARCH_NAME=bp&SERVICE=plain&SET_DEFAULTS=Yes&SET_DEFAULTS.x=36&SET_DEFAULTS.y=10&SHOW_LINKOUT=on&SHOW_OVERVIEW=on&USER_TYPE=2&WORD_SIZE=3&END_OF_HTTPGET=Yes

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  • tools-utilities
  • dataset
  • virus

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