Resilience of Microbial Communities Sequence Data Set
Description
The EX_Genome_Assemblies.zip file contain the contig sequences (i.e. assembly) of fifteen isolates used for genomic and antibiotic resistance genes (ARG) analysis.
EX_OTU.fasta file contain the sequences of the bacterial 16S rRNA-encoding V4 region gene (≈250 nt) for each Operational Taxonomic Unit (OTU).
This dataset is associated with the following publication:
Gomez-Alvarez, V., S. Pfaller, J. Pressman, D. Wahman, and R. Revetta. Resilience of microbial communities in a simulated drinking water distribution system subjected to disturbances: role of conditionally rare taxa and potential implications for antibiotic-resistant bacteria. Environmental Science: Water Research & Technology. Royal Society of Chemistry, Cambridge, UK, 2: 645-657, (2016).
Resources
| Name |
Format |
Description |
Link |
|
0 |
|
https://trace.ncbi.nlm.nih.gov/Traces/sra/?study=SRP069876 |
|
57 |
EX_Genome_Assemblies.zip |
https://pasteur.epa.gov/uploads/10.23719/1503390/EX_Genome_Assemblies.zip |
|
57 |
EX_OTU.fasta.zip |
https://pasteur.epa.gov/uploads/10.23719/1503390/EX_OTU.fasta.zip |
Tags
- otu
- drinking-water
- antibiotic-resistance-genes
- 16s-rrna
- genomes
- nitrification
- microbial-communities
- biofilm