Description
To determine the patterns and thresholds of tissue regeneration in Orbicella annularis coral colonies from parrotfish predation, we monitored tissue regeneration of fresh parrotfish bite scars on O. annularis colonies over time across two Caribbean islands, St. Croix and Bonaire. We monitored colonies on St. Croix from June to July 2018 for up to 28 days on Bonaire from June to August 2019 for up to 64 days. This file includes the four datasets used in our study entitled 'Impacts of parrotfish predation on a major reef-building coral: quantifying healing rates and thresholds of coral recovery' (https://doi.org/10.1007/s00338-020-01977-9). For a detailed description of methods, please refer to this publication.
Dataset overview:
1) 'A1_data_overview.csv', a file that describes each variable within each of the subsequent datasets.
2) OANN_scar_healing_after_up_to_28_days.csv, the total observed tissue regeneration of parrotfish bite scars on Orbicella annularis colonies on St. Croix and Bonaire between the initial monitoring date and after 21-28 days of monitoring.
3) OANN_scar_healing_after_up_to_64_days.csv, the total observed tissue regeneration of parrotfish bite scars on Orbicella annularis colonies on Bonaire between the initial monitoring data and after 55-64 days of monitoring.
4) OANN_scar_healing_time_series.csv, time series observations of tissue regeneration of parrotfish bite scars on Orbicella annularis colonies on St. Croix and Bonaire between each 2-7 day monitoring interval over the course of the study. There are multiple, successive observations of tissue regeneration for each scars on each monitoring day.
5) OANN_scar_standing_stock.csv, the distribution of haphazardly surveyed parrotfish predation scars on St. Croix and Bonaire at a point in time observed within 30m x 1m belt transects conducted across a range of depths up to 18m. This dataset includes the total abundance of scars per colony, the number of fresh bite scars, and the estimated minimum, median, and maximum observed scar per colony and colony size measurements for all Orbicella annularis colonies with parrotfish predation scars present within transects.
Methods overview:
We conducted this at four sites on St. Croix from June to July of 2018 and four sites on Bonaire from June to August of 2019. At each site, we opportunistically tagged O. annularis colonies with recent parrotfish bite scars. For each colony, we recorded the colony surface area, depth in the water column, and the abundance of recent parrotfish bite scars. For each scar on the colony, we took a close up photograph of the scar with a size reference. We returned to photograph scars every 2 to 7 days, with more frequent monitoring at the start of the study. On St. Croix, we monitored scars for 21- 28 days or until the scars fully healed (i.e., a soft tissue layer had completely enclosed the scar area). Research on tissue regeneration in O. annularis suggests that the majority of scar tissue regeneration occurs within the first few weeks after scars are inflicted, though scars may continue to heal for up to almost two months (Meesters et al. 1994, 1997). Therefore, on Bonaire, we monitored scars for 55- 64 days or until scars fully healed. We used Image J 1.46r to trace and measure the surface area of each scar on a given monitoring day and used these measurements to calculate change in scar area over time.
References:
Meesters EH, Noordeloos M, Bak RPM (1994) Damage and regeneration: Links to growth in the reef-building coral Montastraea annularis. Mar Ecol Prog Ser 112:119-128
Meesters EH, Pauchli W, Bak RPM (1997) Predicting regeneration of physical damage on a reef-building coral by regeneration capacity and lesion shape. Mar Ecol Prog Ser 146:91-99
Resources
| Name | Format | Description | Link |
|---|---|---|---|
| FTP | Unknown | These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP). | |
| FTP | Unknown | These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP). | |
| FTP | Unknown | These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP). | |
| FTP | Unknown | These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP). | |
| FTP | Unknown | These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP). | |
| FTP | Unknown | These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP). | |
| FTP | Unknown | These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP). | |
| FTP | Unknown | These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP). | |
| FTP | Unknown | These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP). | |
| https://doi.org/10.1007/s00338-020-01977-9 | Unknown | journal article | Open resource |
| https://doi.org/10.1007/s00338-020-01977-9 | Unknown | journal article | Open resource |
| https://doi.org/10.1007/s00338-020-01977-9 | Unknown | journal article | Open resource |
| https://doi.org/10.1007/s00338-020-01977-9 | Unknown | journal article | Open resource |
| https://doi.org/10.1007/s00338-020-01977-9 | Unknown | journal article | Open resource |
| https://doi.org/10.1007/s00338-020-01977-9 | Unknown | journal article | Open resource |
| https://doi.org/10.1007/s00338-020-01977-9 | Unknown | journal article | Open resource |
| https://doi.org/10.1007/s00338-020-01977-9 | Unknown | journal article | Open resource |
| https://doi.org/10.1007/s00338-020-01977-9 | Unknown | journal article | Open resource |
| https://doi.org/10.3354/meps112119 | Unknown | journal article | Open resource |
| https://doi.org/10.3354/meps112119 | Unknown | journal article | Open resource |
| https://doi.org/10.3354/meps112119 | Unknown | journal article | Open resource |
| https://doi.org/10.3354/meps112119 | Unknown | journal article | Open resource |
| https://doi.org/10.3354/meps112119 | Unknown | journal article | Open resource |
| https://doi.org/10.3354/meps112119 | Unknown | journal article | Open resource |
| https://doi.org/10.3354/meps112119 | Unknown | journal article | Open resource |
| https://doi.org/10.3354/meps112119 | Unknown | journal article | Open resource |
| https://doi.org/10.3354/Meps112119 | Unknown | journal article | Open resource |
| https://doi.org/10.3354/meps146091 | Unknown | journal article | Open resource |
| https://doi.org/10.3354/meps146091 | Unknown | journal article | Open resource |
| https://doi.org/10.3354/meps146091 | Unknown | journal article | Open resource |
| https://doi.org/10.3354/meps146091 | Unknown | journal article | Open resource |
| https://doi.org/10.3354/meps146091 | Unknown | journal article | Open resource |
| https://doi.org/10.3354/meps146091 | Unknown | journal article | Open resource |
| https://doi.org/10.3354/meps146091 | Unknown | journal article | Open resource |
| https://doi.org/10.3354/meps146091 | Unknown | journal article | Open resource |
| https://doi.org/10.3354/meps146091 | Unknown | journal article | Open resource |
| GCMD Keyword Forum Page | Unknown | Global Change Master Directory (GCMD). 2025. GCMD Keywords, Version 21. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords | Open resource |
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| GCMD Keyword Forum Page | Unknown | Global Change Master Directory (GCMD). 2025. GCMD Keywords, Version 21. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords | Open resource |
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| NCEI Dataset Landing Page | Unknown | Navigate directly to the URL for a descriptive web page with download links. | Open resource |
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| NCEI Contact Information | Unknown | Information for contacts at NCEI. | Open resource |
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| University of Texas at Austin (UT Austin) website | Unknown | Institution web page | Open resource |
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| UT Austin Marine Science Institute website | Unknown | Institution web page | Open resource |
| UT - Austin Marine Science Institute website | Unknown | Institution web page | Open resource |
Tags
- aquatic habitat
- atlantic ocean
- b6tcxg
- belt transect
- benthos analysis
- biology
- biosphere
- bonaire
- bonaire (12n068w0002)
- buck island reef (17n064w0001)
- cane garden bay (17n064w0014)
- caribbean sea
- coastal processes
- coral predation
- coral recovery
- coral reef ecology
- coral reefs
- corals
- country/territory
- earth science
- ecological dynamics
- feeding scars on hard coral
- fish
- fy16 domestic grant
- in situ biological
- karpata (12n068w0006)
- leeward group
- lesser antilles
- na16nos4820050
- netherlands antilles
- numeric data sets
- ocean basin
- oceanography
- oceans
- photographic analysis
- predation
- quantifying corallivory by parrotfishes: species-specific preferences and impacts on threatened cora
- reef damage assessment
- reef habitat
- reef monitoring and assessment
- scleractinia (stony corals)
- st. croix
- st. croix (17n064w0003)
- transect monitoring
- united states of america
- u. s. virgin islands
- u. s. virgin islands (17n064w0000)
- virgin islands
- zoology