Simulation dataset to benchmark 3D force inference methods
Description
Simulated dataset of 46 images (.tif), segmentation masks (.tif), corresponding to foam-like cell structures (early embryos) of various cell numbers (2 to 11), cell sizes and interfacial tensions. The ground truth tensions and pressures to be inferred are provided as Numpy arrays (.npy). Non-manifold multimaterial meshes corresponding meshes are also provided as binary files (.rec) and may be opened with our delaunay-watershed Python code, that can be installed via pip install delaunay-watershed-3d
Resources
| Name |
Format |
Description |
Link |
|
0 |
|
http://data.europa.eu/88u/dataset/oai-zenodo-org-7880639 |
|
0 |
|
http://data.europa.eu/88u/dataset/oai-zenodo-org-7880639 |
Tags
- tensions
- benchmark-dataset
- foam-like-structures
- segmentation
- 3d-force-inference
- simulations
- mesh