Single-cell information extracted from IMC example data

Description

This repository contains additional information related to IMC example data available at zenodo.org/record/5949116. The following files are available and are part of the IMC Data Analysis workflow gated_cells.zip: contains SpatialExperiment objects storing cells that were manually gated based on their expression values to derive ground truth cell phenotype labels.  spe.rds: SpatialExperiment object containing the single-cell information (mean intensity per cell and per channel; cellular metadata; channel metadata) of the processed data. images.rds: CytoImageList object containing the spillover-corrected images. masks.rds: CytoImageList object containing the segmentation masks.

Resources

Name Format Description Link
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-6810879
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-6810879
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-6810879
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-6810879
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-6810879

Tags

  • imaging-mass-cytometry
  • single-cell

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