KMA Mapping and alignment statistics : livestock fecal metagenomes against ResFinder and genomes
Description
Three zip archives are included used in the analysis of the European livestock resistome. Two of them contain 'mapstat' files produced by the KMA software using the 'extended features' flag. Each mapstat file thus summarize the mapping and alignment statistics when using KMA on a metagenome against a database. The last archive contains the 'refdata' file used to annotate the genomic mapstat hits. It encodes the taxonomic affilication of sequences hit by one or more samples.
Resources
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http://data.europa.eu/88u/dataset/oai-zenodo-org-5880380 |
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http://data.europa.eu/88u/dataset/oai-zenodo-org-5880380 |
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http://data.europa.eu/88u/dataset/oai-zenodo-org-5880380 |
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http://data.europa.eu/88u/dataset/oai-zenodo-org-5880380 |
Tags
- resistance,-livestock,-metagenomic,-mapstat,-alignment