Stability of temperature-induced DNA methylation changes across clonal generation in the common Duckweed Lemna minor L. - Phenotypic Data
Description
The following depository contains raw phenotypic data and intermediate DNA methylation data presented in the article "Stability of temperature-induced DNA methylation changes across clonal generation in the common Duckweed Lemna minor L." : 1) Raw phenotypic data - Frond_area_Phase1_Phase2 -> Frond area measured at different time points (week 1, 6, 7 and 8) during the experiment. - Frond_number_Phase1_Phase2 -> Frond number measured at different time points (week 1, 6, 7 and 8) during the experiment. 2) Intermediate files obtained from running the epiGBS2 pipeline. The following files are available: - consensus_cluster.renamed.fa -> epiGBS de novo loci. This file consists of the de novo epiGBS reference sequence file obtained during the de novo reference creation. - methylationFiltered.bed -> The filtered DNA methylation data. This data was obtained after filtering the raw DNA methylation data. Cytosines which had a 10X coverage or higher and which were present in 80% of all samples were kept for further analysis. Raw sequencing were deposited at ENA: Demultiplexed data were deposited at NCBI:
Resources
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http://data.europa.eu/88u/dataset/oai-zenodo-org-5668027 |
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http://data.europa.eu/88u/dataset/oai-zenodo-org-5668027 |
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http://data.europa.eu/88u/dataset/oai-zenodo-org-5668027 |
Tags
- lemna-minor
- transgenerational
- epigenetic-inheritance
- clonal-reproduction
- dna-methylation
- temperature-stress