Identification of spatial compartments in tissue from in situ sequencing data

Example data [1] for testing in situ sequencing graph-based decoding pipeline and decoding results for reproducing publication analyses. Image decoding pipeline and notebooks are available at: https://github.com/wahlby-lab/graph-iss ------------ [1] Ke, Rongqin, et al. "In situ sequencing for RNA analysis in preserved tissue and cells." Nature methods 10.9 (2013): 857.