Simulated metagenomes with quality and abundance distributions derived from real samples

Description

Species abundances and quality values were derived from the following list of samples: SAMEA2466896 SAMEA2466916 SAMEA2466952 SAMEA2466953 SAMEA2466965 SAMEA2466996 SAMEA2467015 SAMEA2467039 SAMEA2621010 SAMEA2621033 SAMEA2621107 SAMEA2621155 SAMEA2621229 SAMEA2621247 SAMEA2621300 SAMEA2622357 Reference abundances were generated using mOTUs profiler. Metagenomes were simulated with cMESSi using proGenomes' representative contigs for species and the aforementioned abundances. In cases where a ref_mOTU_v2 corresponded to more than one genome, the abundance of said ref_mOTU was distributed equally over all genomes. GFF location files were produced using location information generated by cMESSi. Truth vectors were obtained by intersecting coordinates of simulated reads with coordinates of eggNOG orthologous groups (OG at NOG level) as predicted by eggNOG-mapper. A read overlapping multiple genes is considered for each gene. If a gene possesses multiple NOG annotations, each annotation gets assigned the total number of overlapping reads. If you use this dataset, please cite: NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language

Resources

Name Format Description Link
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-2539432

Tags

  • metagenome
  • simulation

Topics

Categories