Description
This dataset includes the meshes of ten atrial anatomies (AA) ready for simulation using MonoAlg3D (https://github.com/rsachetto/MonoAlg3D_C). Ten folders are provided with the name AtrialAnatomyXX (XX being an integer from 1 to 10). Inside each folder there is Geometry with atrial region tags: atria_AA_XX.alg Fibers for the corresponding anatomy: atria_AA_XX.fibers These atrial anatomies might be presented with absence of low voltage areas (FB_0) or with 15% low voltage areas in the right and left atrium (FB_1). Therefore, the actual names that can be found inside the Baseline folder are: atria_AA_XX_FB_0.alg atria_AA_XX_FB_1.alg atria_AA_XX_FB_0.fibers atria_AA_XX_FB_1.fibers Inside the Baseline folder there is an additional file with the suffix (*SV_AF.txt). This file includes the State Variables (or initial conditions) needed to impose AF in the tissue for each geometry: atria_AA_XX_SV_AF.txt Additional to the atrial anatomies, configuration files for running simulations are provided in the folder Configuration_Files. There are two sub-folders, one to save the state at 2 seconds of tjhe simulation (only control conditions), another to restore the state and run simulations from 2 until 7 seconds (control and treatment simulations). Each configuration file corresponds to a different virtual patient (VirtPat) and has the following name: VirtPat_EP_N_AA_XX_FB_YY_TRTM_ZZ.ini EP_N (electrophysiology): N is an integer ranging from 1 to 50. Different electrophysiology is reflected in the different scaling factors used for the maximal conductance of ionic currents. AA_XX (Atrial anatomy). XX is an integer ranging from 1 to 10. Call to the atrial meshes described above. FB_YY (Fibrosis). YY is a boolean value, either 0 (no LVA) or 1 (15% LVA). TRTM_ZZ (Treatment): This is a string that needs to be replaced by the treatment names (e.g., SK_block)
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