S1000 corpus, large-scale tagging results and other supplementary files

Description

Data associated with the S1000 corpus The tagger software for which the dictionary files in tagger-organisms-dictionary-S1000.tar.gz can be used with can be found here: https://github.com/larsjuhljensen/tagger The online version of the annotation documentation can be found here: https://katnastou.github.io/s1000-corpus-annotation-guidelines/ The S1000 corpus split in training, development and test sets in BRAT format can be found in S1000-corpus.tar.gz and in CoNLL format here: s1000-conll.tar.gz The tagging results of Jensenlab tagger for the S1000 test set are here: S1000-jensenlab-tagger.tar.gz The result from the large scale run in entire PubMed and PMC Open Access articles for Jensenlab tagger is provided here: Jensenlab_tagger_large_scale_matches_with_rank.tsv.gz The model used for the large scale run of the transformer-based method is here: S1000_Transformer_based_tagger_large_scale_model.tar.gz and the results from the large scale tagging here: Transformer_based_tagger_large_scale_matches_with_rank.tsv.zip

Resources

Name Format Description Link
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-10285825
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-10285825
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-10285825
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-10285825
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-10285825
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-10285825
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-10285825
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-10285825
0 http://data.europa.eu/88u/dataset/oai-zenodo-org-10285825

Tags

  • biomedical-corpus-annotation
  • species-named-entity-recognition

Topics

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