NCCOS Assessment: Digitized histological slides for a collaborative project on Stony Coral Tissue Loss Disease (SCTLD) resistance and susceptibility in Orbicella faveolata, collected in Broward County and Florida Keys reefs between May-June 2021 (NCEI Accession 0310739)

Description

This data is part of a multi-investigator, multi-disciplinary collaboration called the SCTLD resistance research consortium (RRC) investigating resistance and susceptibility among Orbicella faveolata populations off Broward and the Lower Florida Keys. These digitized histological slides include tissue biopsies from wild O. faveolata colonies from two regions (the Kristin Jacobs Coral Reef Ecosystem Conservation Area in Broward County, and Looe Key and Sand Key in the Florida Keys National Marine Sanctuary) and three resistance categories (“Low Resistance”, “Medium Resistance”, “High Resistance”) collected in mid-June – mid-August, 2021. All slides were stained with Movat’s pentachrome stain and scanned on a digital slide scanner to a maximum magnification of 40x. All images are in .svs format. This dataset only includes the raw histological slide collection and associated metadata from biopsied coral colonies. Results from the analysis of the histological slides will be available from partner labs in separate associated datasets.

Resources

Name Format Description Link
0 Navigate directly to the URL for a descriptive web page with download links. https://www.ncei.noaa.gov/archive/accession/0310739
0 Navigate directly to the URL for a descriptive web page. https://www.ncei.noaa.gov/archive/accession/oas/310739
0 Navigate directly to the URL for a descriptive web page. https://www.ncei.noaa.gov/archive/accession/download/310739
0 Users may contact NCEI for more information and to request access to the archived data. User requests must be approved by NCEI and are subject to order fulfillment constraints. https://www.ncei.noaa.gov/contact
0 Information for contacts at NCEI. https://www.ncei.noaa.gov/contact
0 Institution web page https://coastalscience.noaa.gov/
0 Institution web page https://coastalscience.noaa.gov/
0 Institution web page https://coastalscience.noaa.gov/
0 Institution web page https://www.usgs.gov/
21 Institution web page http://www.nova.edu/index.html
0 Institution web page https://coastalscience.noaa.gov/
21 Institution web page http://www.nova.edu/index.html
21 Institution web page http://www.nova.edu/index.html
0 Institution web page https://floridakeys.noaa.gov/
0 Institution web page http://myfwc.com/
0 Institution web page http://www.sms.si.edu
0 Institution web page http://www.rsmas.miami.edu
21 Institution web page http://www.nova.edu/index.html
0 Institution web page http://www.gatech.edu/
0 Institution web page https://www.usgs.gov/
0 Institution web page http://www.ufl.edu/
21 Institution web page http://www.nova.edu/index.html
0 Institution web page http://www.sms.si.edu
21 Institution web page http://www.nova.edu/index.html
0 Institution web page http://www.rsmas.miami.edu
0 Institution web page http://www.rsmas.miami.edu
0 Institution web page https://coastalscience.noaa.gov/
0 Institution web page https://coastalscience.noaa.gov/
21 Institution web page http://www.nova.edu/index.html
0 Institution web page https://www.usgs.gov/
0 Institution web page https://www2.gmu.edu/
21 Institution web page http://www.nova.edu/index.html
0 Institution web page https://coastalscience.noaa.gov/
0 Institution web page https://floridakeys.noaa.gov/
0 Institution web page https://coastalscience.noaa.gov/
0 Institution web page http://myfwc.com/
0 Institution web page http://www.gatech.edu/
21 Institution web page http://www.nova.edu/index.html
0 Institution web page http://www.sms.si.edu
0 Institution web page http://www.ufl.edu/
0 Institution web page https://www.usgs.gov/
0 Institution web page http://www.rsmas.miami.edu
0 Information for contacts at NCEI. https://www.ncei.noaa.gov/contact
0 Global Change Master Directory (GCMD). 2025. GCMD Keywords, Version 21. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords
0 Global Change Master Directory (GCMD). 2025. GCMD Keywords, Version 21. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords
0 Global Change Master Directory (GCMD). 2025. GCMD Keywords, Version 21. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords
0 Global Change Master Directory (GCMD). 2025. GCMD Keywords, Version 21. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords
0 Related journal article https://doi.org/10.3389/fmars.2024.1369222
0 Related journal article https://doi.org/10.3389/fmars.2024.1287457
0 Raw sequence reads https://www.ncbi.nlm.nih.gov/bioproject/PRJNA726962/
0 Metaproteomic analysis of nine coral species with and without Stony Coral Tissue Loss Disease https://www.ebi.ac.uk/pride/archive/projects/PXD026192
0 Proteomic Investigation of Factors Driving Resistance and/or Resilience to Stony Coral Tissue Loss Disease. https://www.ebi.ac.uk/pride/archive/projects/PXD038195
0 Data Documentation https://www.fisheries.noaa.gov/inport/item/73852
0 Slide database https://myfwc.com/research/about/resources/eslide/

Tags

  • coral pathology
  • florida reef tract
  • united states of america
  • nccos research priority
  • coral histology
  • nccos research location
  • nccos research topic
  • corals
  • orbicella faveolata
  • biosphere
  • stony coral tissue loss disease (sctld)
  • ucmyym
  • monroe county
  • oceans
  • n/a
  • marine invertebrates
  • florida keys national marine sanctuary
  • long key (24n080w0017)
  • sand key (24n081w0012)
  • digitized histology slides of diseased coral tissues
  • caribbean sea
  • oceanography
  • 31618
  • atlantic ocean
  • fort lauderdale (26n080w0003)
  • earth science
  • florida keys (24n081w0007)
  • stressor impacts and mitigation
  • broward county
  • nccos research data type
  • region
  • upper florida keys
  • marine biology
  • lower florida keys
  • field experiment
  • dry tortugas national park
  • visual images
  • broward county (26n080w0006)
  • regional ecosystem science
  • florida reef tract (26n080w0007)
  • florida
  • u.s. states and territories
  • invertebrates
  • ocean basin
  • use of ‘omics for coral restoration and disease intervention
  • noaa coral reef conservation program
  • coral
  • disease response
  • coral mortality
  • zoology
  • coral condition
  • looe key reef (24n081w0002)
  • north atlantic ocean
  • country/territory
  • kristin jacob’s coral reef ecosystem conservation area
  • digital slide scanner (40x) with easyscaninfinity software

Topics

Categories