Description
This repository includes the raw data, analysis code, and results of a systematic analysis of natural transformation (i.e., horizontal gene transfer; HGT) of bacteria in a naturally occurring microbiome (human stool) following exposure to free extracellular DNA (eDNA) that coded for antibiotic resistance. A full description of this effort is available in the associated publication.
Resources
| Name | Format | Description | Link |
|---|---|---|---|
| READEME file | Text | This file describes the organization of this data record. | Open resource |
| README | Text | This READEME file describes the organization this data record. | Open resource |
| Read Me | Binary | This READEME file describes the organization this data record. | Open resource |
| README | Text | Open resource | |
| Figure 1 - ddPCR Analysis | Binary | Analysis code of ddPCR data. | Open resource |
| Text File | Text | Open resource | |
| Web Resource | Binary | FIG4-WGS-AnalyzingProcessedReads.Rmd | Open resource |
| Text File | Text | Open resource | |
| Web Resource | Binary | FIG5-WGS-AnalyzingProcessedReads.Rmd | Open resource |
| Text File | Text | Open resource | |
| Data | ZIP | This compressed folder contains the raw data collected in the analysis of aforementioned samples. This includes CFU count results, ddPCR gene quantification, long-read next-generation sequencing (Nanopore) of isolates, and shotgun metagenomic sequencing characterization of microbiome samples. | Open resource |
| Text File | Text | Open resource | |
| MS Excel File | XLS | HGT_STORMS_Checklist.xlsx | Open resource |
| Text File | Text | Open resource |