pciSeq files in csv format
Description
This figshare data set contains more easily accessible format of files included in figshare dataset https://doi.org/10.6084/m9.figshare.7150760
In situ sequencing (ISS) is a technology to sequence RNA directly inside tissue sections, and probabilistic
cell typing by ISS (pciSeq) method is a method to spatially map single-cell RNA-sequencing defined cell types. (See Associated Publication)
* spots_whole_section files have three columns: genes, X and Y position
* mask files contain polygon coordinates of CA1 regions
* cells files have cell ID, X and Y position of cells in CA1, and sum of probabilities of all assigned reads.
* spots_w_segmentation files contain spot assignment results from pciSeq algorithm.
* celltype files contain cell type assignment results from pciSeq algorithm.
Resources
| Name |
Format |
Description |
Link |
|
0 |
|
http://data.europa.eu/88u/dataset/https-doi-org-10-17045-sthlmuni-10318610 |
Tags
- neuroscience
- dataset
- molecular-biology