Description
The file contains the annotation for the repetitive regions in
Linum tenue
.
The detection of repeats has been done with RepeatMasker/RepeatModeler (https://www.repeatmasker.org/) using a custom repeat library.
The genome has been deposited to ENA with the accession id: GCA_946122785 (Project PRJEB52918). See link below.
It is part of this article Gutiérrez-Valencia, J., Fracassetti, M., Berdan, E. L., Bunikis, I., Soler, L., Dainat, J., ... & Slotte, T. (2022). Genomic analyses of the Linum distyly supergene reveal convergent evolution at the molecular level.
Current Biology
,
32
(20), 4360-4371. 10.1016/j.cub.2022.08.042
The file is in BED format converted with BEDOPS. The fourth (Repeat class) and eleventh (Repeat name) columns have been reversed to highlight the Repeat name in the visualization.
Query sequence 1 chromosome
Query start 2 start
Query end 3 stop
Repeat class 4 id
Smith-Waterman score 5 score
Strand 6 strand
Percentage, substitutions 7
Percentage, deleted bases 8
Percentage, inserted bases 9
Bases in query, past match 10
Repeat name 11
Bases in complement of the repeat consensus sequence 12
Match start 13
Match end 14
Unique ID 15
Higher-scoring match (optional) 16
Resources
| Name | Format | Description | Link |
|---|---|---|---|
| Landing page for the dataset | Unknown | Open resource |