Description
The file contains the annotation fo the repetitive regions in Linum trigynum.
The detection of Repeat has been done with RepeatMasker/RepeatModeler using a custom repeat library.
The genome has been deposited to ENA with the accession id: GCA_964030455 (project PRJEB67577).
It is part of this article: Gutiérrez-Valencia, J., Zervakis, P. I., Postel, Z., Fracassetti, M., Losvik, A., Mehrabi, S., ... & Slotte, T. (2024). Genetic causes and genomic consequences of breakdown of distyly in Linum trigynum. Molecular Biology and Evolution, msae087. https://doi.org/10.1093/molbev/msae087
The file is in BED format converted with BEDOPS. The fourth (Repeat class) and eleventh (Repeat name) columns have been reversed to highlight the Repeat name in the visualization.
Query sequence 1 chromosome
Query start 2 start
Query end 3 stop
Repeat class 4 id
Smith-Waterman score 5 score
Strand 6 strand
Percentage, substitutions 7
Percentage, deleted bases 8
Percentage, inserted bases 9
Bases in query, past match 10
Repeat name 11
Bases in complement of the repeat consensus sequence 12
Match start 13
Match end 14
Unique ID 15
Higher-scoring match (optional) 16
Resources
| Name | Format | Description | Link |
|---|---|---|---|
| Landing page for the dataset | Unknown | Open resource |