High-volume, label-free imaging for quantifying single-cell dynamics in iPSC colonies

Description

This collection is comprised of multiple sets of experiments involving iPSCs with varying dosages of fluorescent light excitation. Samples were imaged every 2 minutes using phase-contrast microscopy for 20+ hours with or without fluorescence excitation. Each experiment was done on different days (i.e. exp0 vs exp1) but with triplicate wells (i.e. exp1-0, exp1-1, exp1-2). Additionally, data used to train our 2D U-Net and 3D U-Net models are included. Detailed information for each dataset can be found in Dataset_Information.xlsx.

Resources

Name Format Description Link
exp7 ZIP exp7.zip Open resource
Text File Text Open resource
Dataset_Information XLS Dataset_Information.xlsx Open resource
exp0 ZIP exp0.zip Open resource
exp1 ZIP exp1.zip Open resource
exp2-0 ZIP exp2-0.zip Open resource
exp2-1 ZIP exp2-1.zip Open resource
exp2-2 ZIP exp2-2.zip Open resource
exp2-3 ZIP exp2-3.zip Open resource
exp2-4 ZIP exp2-4.zip Open resource
exp2-5 ZIP exp2-5.zip Open resource
exp3-0 ZIP exp3-0.zip Open resource
exp3-1 ZIP exp3-1.zip Open resource
exp3-2 ZIP exp3-2.zip Open resource
exp3-3 ZIP exp3-3.zip Open resource
exp3-4 ZIP exp3-4.zip Open resource
exp3-5 ZIP exp3-5.zip Open resource
exp4-0 ZIP exp4-0.zip Open resource
exp4-1 ZIP exp4-1.zip Open resource
exp4-2 ZIP exp4-2.zip Open resource
exp4-3 ZIP exp4-3.zip Open resource
exp4-4 ZIP exp4-4.zip Open resource
exp4-5 ZIP exp4-5.zip Open resource
exp5-0 ZIP exp5-0.zip Open resource
exp5-1 ZIP exp5-1.zip Open resource
exp5-2 ZIP exp5-2.zip Open resource
exp5-3 ZIP exp5-3.zip Open resource
exp5-4 ZIP exp5-4.zip Open resource
exp5-5 ZIP exp5-5.zip Open resource
exp6-0 ZIP exp6-0.zip Open resource
exp6-1 ZIP exp6-1.zip Open resource
training_3DUNET ZIP training_3DUNET.zip Open resource
training_high ZIP training_high.zip Open resource
training_low ZIP training_low.zip Open resource
training_medium ZIP training_medium.zip Open resource
WSDOM iPSC Tracking GitHub Page Python GitHub page with all scripts and models used for the image dataset. Open resource

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