Description
This collection is comprised of multiple sets of experiments involving iPSCs with varying dosages of fluorescent light excitation. Samples were imaged every 2 minutes using phase-contrast microscopy for 20+ hours with or without fluorescence excitation. Each experiment was done on different days (i.e. exp0 vs exp1) but with triplicate wells (i.e. exp1-0, exp1-1, exp1-2). Additionally, data used to train our 2D U-Net and 3D U-Net models are included. Detailed information for each dataset can be found in Dataset_Information.xlsx.
Resources
| Name | Format | Description | Link |
|---|---|---|---|
| exp7 | ZIP | exp7.zip | Open resource |
| Text File | Text | Open resource | |
| Dataset_Information | XLS | Dataset_Information.xlsx | Open resource |
| exp0 | ZIP | exp0.zip | Open resource |
| exp1 | ZIP | exp1.zip | Open resource |
| exp2-0 | ZIP | exp2-0.zip | Open resource |
| exp2-1 | ZIP | exp2-1.zip | Open resource |
| exp2-2 | ZIP | exp2-2.zip | Open resource |
| exp2-3 | ZIP | exp2-3.zip | Open resource |
| exp2-4 | ZIP | exp2-4.zip | Open resource |
| exp2-5 | ZIP | exp2-5.zip | Open resource |
| exp3-0 | ZIP | exp3-0.zip | Open resource |
| exp3-1 | ZIP | exp3-1.zip | Open resource |
| exp3-2 | ZIP | exp3-2.zip | Open resource |
| exp3-3 | ZIP | exp3-3.zip | Open resource |
| exp3-4 | ZIP | exp3-4.zip | Open resource |
| exp3-5 | ZIP | exp3-5.zip | Open resource |
| exp4-0 | ZIP | exp4-0.zip | Open resource |
| exp4-1 | ZIP | exp4-1.zip | Open resource |
| exp4-2 | ZIP | exp4-2.zip | Open resource |
| exp4-3 | ZIP | exp4-3.zip | Open resource |
| exp4-4 | ZIP | exp4-4.zip | Open resource |
| exp4-5 | ZIP | exp4-5.zip | Open resource |
| exp5-0 | ZIP | exp5-0.zip | Open resource |
| exp5-1 | ZIP | exp5-1.zip | Open resource |
| exp5-2 | ZIP | exp5-2.zip | Open resource |
| exp5-3 | ZIP | exp5-3.zip | Open resource |
| exp5-4 | ZIP | exp5-4.zip | Open resource |
| exp5-5 | ZIP | exp5-5.zip | Open resource |
| exp6-0 | ZIP | exp6-0.zip | Open resource |
| exp6-1 | ZIP | exp6-1.zip | Open resource |
| training_3DUNET | ZIP | training_3DUNET.zip | Open resource |
| training_high | ZIP | training_high.zip | Open resource |
| training_low | ZIP | training_low.zip | Open resource |
| training_medium | ZIP | training_medium.zip | Open resource |
| WSDOM iPSC Tracking GitHub Page | Python | GitHub page with all scripts and models used for the image dataset. | Open resource |