High-throughput sequencing taxonomic identification and morphology-based taxonomic identification raw data

Description

The files include the presence/absence data by sample for either high-throughput sequencing-based taxonomy or morphology-based taxonomy. The files also include our estimates of the species' biomass in each sample, along with the presence/absence classification by taxonomic method. This dataset is associated with the following publication: Hoffman, J., C. Meredith, E. Pilgrim, A. Trebitz, C. Hatzenbuhler, J. Kelly, G. Peterson, J. Lietz, S. Okum, and J. Martinson. Comparison of larval fish detections using morphology-based taxonomy versus high-throughput sequencing for invasive species early detection. CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES. NRC Research Press, Ottawa, CANADA, 78(6): 752-764, (2021).

Resources

Name Format Description Link
0 https://cdnsciencepub.com/doi/abs/10.1139/cjfas-2020-0224
53 OTUclusterTables_bothPrimers.xlsx https://pasteur.epa.gov/uploads/10.23719/1520945/OTUclusterTables_bothPrimers.xlsx
53 MorphID.xlsx https://pasteur.epa.gov/uploads/10.23719/1520945/MorphID.xlsx
53 Fish_biomass_data_1_20_20.xlsx https://pasteur.epa.gov/uploads/10.23719/1520945/Fish_biomass_data_1_20_20.xlsx

Tags

  • taxonomy
  • dna-metabarcoding
  • monitoring
  • invasive-species
  • ichthyoplankton

Topics

Categories