| Name |
Format |
Description |
Link |
|
19 |
GRCh37_BadPromoters.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/FunctionalTechnicallyDifficultRegions/GRCh37_BadPromoters.gz |
|
19 |
GRCh37_gc25to30_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gc25to30_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/SegmentalDuplications/GRCh37_segdups_gt10kb.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv4.1_CNV_CCSandONT_elliptical_outlier.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_AllTandemRepeats_201to10000bp_slop5.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG003_GIABv3.3.2_complexandSVs.bed.gz.sha256 |
|
19 |
GRCh37_SimpleRepeat_diTR_51to200_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_SimpleRepeat_diTR_51to200_slop5.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gc25to30_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gc55to60_slop50.bed.gz.sha256 |
|
19 |
GRCh38_VDJ.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/OtherDifficult/GRCh38_VDJ.bed.gz |
|
5 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_Generating_v4.1_excluded_beds.ipynb |
|
19 |
GRCh38_HG004_GIABv3.3.2_snpswithin10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG004_GIABv3.3.2_snpswithin10bp_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_AllHomopolymers_gt6bp_imperfectgt10bp_slop5.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_PacBio_MetaSV.bed.gz.sha256 |
|
19 |
GRCh38_nonunique_l100_m2_e1.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/mappability/GRCh38_nonunique_l100_m2_e1.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/mappability/GRCh38_notinlowmappabilityall.bed.gz.sha256 |
|
5 |
create_GRCh37_cds_bed.Rmd |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/FunctionalRegions/create_GRCh37_cds_bed.Rmd |
|
19 |
GRCh37_VDJ.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/OtherDifficult/GRCh37_VDJ.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG005_GIABv3.3.2_snpswithin10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh38_SimpleRepeat_quadTR_20to50_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_SimpleRepeat_quadTR_20to50_slop5.bed.gz |
|
0 |
Version controlled repository with code used to generate the stratification files. |
https://github.com/genome-in-a-bottle/genome-stratifications |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_SimpleRepeat_triTR_gt200_slop5.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG004_GIABv3.3.2_complexindel10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh37_HG002_GIABv4.1_othercomplexwithin10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv4.1_othercomplexwithin10bp_slop50.bed.gz |
|
19 |
GRCh37_HG002_GIABv4.1_inversions_slop25percent.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv4.1_inversions_slop25percent.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/Prepare%20Stratification%20BEDs%20for%20GitHub.ipynb.sha256 |
|
19 |
GRCh37_HG004_GIABv3.3.2_notin_complexandSVs_alldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG004_GIABv3.3.2_notin_complexandSVs_alldifficultregions.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/v2.0-GRCh37-GenomeSpecific-README.txt.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/OtherDifficult/GRCh37_hs37d5_decoy_alignments.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_expanded_150_Tier1plusTier2_v0.6.1.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/FunctionalRegions/v2.0-GRCh37-FunctionalRegions-README.txt.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gc15_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gc55to60_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gc60to65_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/SegmentalDuplications/v2.0-GRCh37-SegDup-README.txt.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv3.3.2_complexandSVs.bed.gz.sha256 |
|
19 |
GRCh37_SimpleRepeat_quadTR_51to200_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_SimpleRepeat_quadTR_51to200_slop5.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv3.3.2_notin_complexandSVs_alldifficultregions.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv4.1_CNVsandSVs.bed.gz.sha256 |
|
47 |
v2.0-GRCh37-LowComplexity-README.txt |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/v2.0-GRCh37-LowComplexity-README.txt |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/OtherDifficult/GRCh37_L1H_gt500.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG005_GIABv3.3.2_complexandSVs_alldifficultregions.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_GIABv3.3.2_complexandSVs.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_GIABv3.3.2_complexindel10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh37_HG002_GIABv4.1_snpswithin10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv4.1_snpswithin10bp_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/OtherDifficult/GRCh37_contigs_lt500kb.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/genome_specific.sh.sha256 |
|
19 |
GRCh37_AllTandemRepeats_gt100bp_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_AllTandemRepeats_gt100bp_slop5.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/SegmentalDuplications/GRCh37_gt5segdups_gt10kb_gt99percidentity.bed.gz.sha256 |
|
5 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/SegmentalDuplications/GRCh37_new_chainSelf_and_Segdups.ipynb |
|
19 |
GRCh37_HG001_RTG_37.7.3_comphetindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_RTG_37.7.3_comphetindel10bp_slop50.bed.gz |
|
19 |
GRCh37_AllTandemRepeats_lt51bp_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_AllTandemRepeats_lt51bp_slop5.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/SegmentalDuplications/GRCh37_notinsegdups.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_RTG_37.7.3_snpswithin10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh37_HG002_GIABv3.2.2_varswithin50bp.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv3.2.2_varswithin50bp.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv3.2.2_varswithin50bp.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/SegmentalDuplications/GRCh37_segdups.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/mappability/GRCh37_lowmappabilityall.bed.gz.sha256 |
|
19 |
GRCh37_nonunique_l100_m2_e1.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/mappability/GRCh37_nonunique_l100_m2_e1.bed.gz |
|
19 |
GRCh38_gc80to85_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gc80to85_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gc80to85_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/mappability/run_GEM_mappability_sort.sh.sha256 |
|
19 |
GRCh38_gc15to20_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gc15to20_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gc15to20_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/mappability/v2.0-GRCh37-mappability-README.txt.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/union/v2.0-GRCh37-Union-README.txt.sha256 |
|
5 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/Prepare%20Stratification%20BEDs%20for%20GitHub.ipynb |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/FunctionalTechnicallyDifficultRegions/format_bed_after_remap.sh.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gc30to55_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gc60to65_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/FunctionalRegions/create_GRCh38_cds_bed.Rmd.sha256 |
|
19 |
GRCh38_refseq_cds.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/FunctionalRegions/GRCh38_refseq_cds.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/FunctionalRegions/create_GRCh38_cds_bed.pdf.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/SegmentalDuplications/GRCh38_segdups.bed.gz.sha256 |
|
19 |
GRCh38_L1H_gt500.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/OtherDifficult/GRCh38_L1H_gt500.bed.gz |
|
19 |
GRCh38_MHC.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/OtherDifficult/GRCh38_MHC.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv4.1_CNV_CCSandONT_elliptical_outlier.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG004_GIABv3.3.2_complexandSVs_alldifficultregions.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG005_GIABv3.3.2_complexandSVs.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/format_bed_after_remap.sh.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/genome_specific_GRCh38merge.sh.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv4.1_snpswithin10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/SegmentalDuplications/GRCh38_chainSelf.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_Tier1plusTier2_v0.6.1.bed.gz.sha256 |
|
19 |
GRCh38_HG003_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG003_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_AllTandemRepeats_gt10000bp_slop5.bed.gz.sha256 |
|
19 |
GRCh38_SimpleRepeat_quadTR_51to200_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_SimpleRepeat_quadTR_51to200_slop5.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_notinAllHomopolymers_gt6bp_imperfectgt10bp_slop5.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/mappability/run_GEM_mappability_sort_GRCh38.sh.sha256 |
|
47 |
v2.0-GRCh38-mappability-README.txt |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/mappability/v2.0-GRCh38-mappability-README.txt |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/union/GRCh38_notinalllowmapandsegdupregions.bed.gz.sha256 |
|
47 |
run_GEM_mappability_GRCh38.sh |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/mappability/run_GEM_mappability_GRCh38.sh |
|
47 |
Merge_difficult_regions_GRCh38.sh |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/union/Merge_difficult_regions_GRCh38.sh |
|
19 |
GRCh37_gc30to55_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gc30to55_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gc80to85_slop50.bed.gz.sha256 |
|
19 |
GRCh37_segdups_gt10kb.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/SegmentalDuplications/GRCh37_segdups_gt10kb.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv4.1_CNV_gt2assemblycontigs_ONTCanu_ONTFlye_CCSCanu.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_SimpleRepeat_triTR_51to200_slop5.bed.gz.sha256 |
|
19 |
GRCh37_HG002_GIABv4.1_comphetsnp10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv4.1_comphetsnp10bp_slop50.bed.gz |
|
19 |
GRCh37_HG005_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG005_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz |
|
19 |
GRCh37_contigs_lt500kb.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/OtherDifficult/GRCh37_contigs_lt500kb.bed.gz |
|
19 |
GRCh37_hs37d5_decoy_alignments.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/OtherDifficult/GRCh37_hs37d5_decoy_alignments.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/OtherDifficult/Merge_difficult_regions.sh.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/OtherDifficult/v2.0-GRCh37-OtherDifficult_README.txt.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_PG2016-1.0_complexindel10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh37_HG003_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG003_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz |
|
19 |
GRCh37_AllTandemRepeatsandHomopolymers_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_AllTandemRepeatsandHomopolymers_slop5.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/SegmentalDuplications/GRCh37_notinchainSelf.bed.gz.sha256 |
|
19 |
GRCh37_notinsegdups_gt10kb.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/SegmentalDuplications/GRCh37_notinsegdups_gt10kb.bed.gz |
|
19 |
GRCh37_HG002_GIABv3.2.2_compoundhet_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv3.2.2_compoundhet_slop50.bed.gz |
|
19 |
GRCh37_HG002_GIABv3.3.2_comphetindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv3.3.2_comphetindel10bp_slop50.bed.gz |
|
19 |
GRCh37_HG004_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG004_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/SegmentalDuplications/GRCh37_notinsegdups_gt10kb.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/mappability/GRCh37_notinlowmappabilityall.bed.gz.sha256 |
|
19 |
GRCh37_nonunique_l250_m0_e0.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/mappability/GRCh37_nonunique_l250_m0_e0.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/mappability/make_all_and_notin_beds.sh.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/union/GRCh37_notinalllowmapandsegdupregions.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gc65to70_slop50.bed.gz.sha256 |
|
33 |
create_GRCh38_cds_bed.pdf |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/FunctionalRegions/create_GRCh38_cds_bed.pdf |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gclt25orgt65_slop50.bed.gz.sha256 |
|
19 |
GRCh38_HG002_GIABv3.3.2_notin_complexandSVs_alldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv3.3.2_notin_complexandSVs_alldifficultregions.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG004_GIABv3.3.2_complexandSVs.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG004_GIABv3.3.2_complexindel10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh38_HG002_GIABv4.1_CNVsandSVs.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv4.1_CNVsandSVs.bed.gz |
|
19 |
GRCh38_HG002_HG003_HG004_allsvs.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_HG003_HG004_allsvs.bed.gz |
|
5 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/SegmentalDuplications/GRCh38_Generating_v4.1_excluded_beds.ipynb |
|
19 |
GRCh38_AllHomopolymers_gt6bp_imperfectgt10bp_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_AllHomopolymers_gt6bp_imperfectgt10bp_slop5.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_PG2016-1.0_comphetindel10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh38_AllTandemRepeats_201to10000bp_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_AllTandemRepeats_201to10000bp_slop5.bed.gz |
|
19 |
GRCh38_SimpleRepeat_imperfecthomopolgt10_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_SimpleRepeat_imperfecthomopolgt10_slop5.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/SegmentalDuplications/GRCh38_notinchainSelf_gt10kb.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/SegmentalDuplications/GRCh38_notinsegdups.bed.gz.sha256 |
|
19 |
GRCh38_alldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/union/GRCh38_alldifficultregions.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/union/GRCh38_alldifficultregions.bed.gz.sha256 |
|
19 |
GRCh37_notinrefseq_union_cds.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/FunctionalRegions/GRCh37_notinrefseq_union_cds.bed.gz |
|
19 |
GRCh37_refseq_cds.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/FunctionalRegions/GRCh37_refseq_cds.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/FunctionalRegions/create_GRCh37_cds_bed.Rmd.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/FunctionalTechnicallyDifficultRegions/v2.0-GRCh37-FunctionalTechDifficult-README.txt.sha256 |
|
19 |
GRCh37_gc15_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gc15_slop50.bed.gz |
|
19 |
GRCh37_HG002_GIABv3.3.2_complexandSVs_alldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv3.3.2_complexandSVs_alldifficultregions.bed.gz |
|
19 |
GRCh37_HG001_GIABv3.2.2_compoundhet_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_GIABv3.2.2_compoundhet_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gc15to20_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gc65to70_slop50.bed.gz.sha256 |
|
47 |
v2.0-GRCh37-SegDup-README.txt |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/SegmentalDuplications/v2.0-GRCh37-SegDup-README.txt |
|
19 |
GRCh37_SimpleRepeat_quadTR_gt200_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_SimpleRepeat_quadTR_gt200_slop5.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv4.1_complexandSVs.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_SimpleRepeat_triTR_15to50_slop5.bed.gz.sha256 |
|
19 |
GRCh37_SimpleRepeat_triTR_51to200_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_SimpleRepeat_triTR_51to200_slop5.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_GIABv3.2.2_varswithin50bp.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG004_GIABv3.3.2_complexandSVs_alldifficultregions.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_GIABv3.3.2_RTG_PG_v3.3.2_SVs_alldifficultregions.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_notinAllTandemRepeatsandHomopolymers_slop5.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/v2.0-GRCh37-LowComplexity-README.txt.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv4.1_comphetsnp10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/OtherDifficult/GRCh37_Generating_v4.1_excluded_beds.ipynb.sha256 |
|
19 |
GRCh37_HG001_GIABv3.3.2_comphetindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_GIABv3.3.2_comphetindel10bp_slop50.bed.gz |
|
19 |
GRCh37_HG001_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv4.1_othercomplexwithin10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh37_HG005_GIABv3.3.2_complexindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG005_GIABv3.3.2_complexindel10bp_slop50.bed.gz |
|
19 |
GRCh37_MHC.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/OtherDifficult/GRCh37_MHC.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/OtherDifficult/GRCh37_allOtherDifficultregions.bed.gz.sha256 |
|
19 |
GRCh37_gaps_slop15kb.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/OtherDifficult/GRCh37_gaps_slop15kb.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/OtherDifficult/GRCh37_gaps_slop15kb.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/OtherDifficult/GRCh37_hg38_minimap2_asm20_N10_nocovgt1kb.bed.gz.sha256 |
|
47 |
v2.0-GRCh37-OtherDifficult_README.txt |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/OtherDifficult/v2.0-GRCh37-OtherDifficult_README.txt |
|
19 |
GRCh37_HG003_GIABv3.3.2_comphetindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG003_GIABv3.3.2_comphetindel10bp_slop50.bed.gz |
|
19 |
GRCh37_chainSelf.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/SegmentalDuplications/GRCh37_chainSelf.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG003_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_AllTandemRepeats_51to200bp_slop5.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/SegmentalDuplications/GRCh37_chainSelf_gt10kb.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_AllTandemRepeats_gt10000bp_slop5.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_RTG_37.7.3_comphetindel10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_AllTandemRepeats_gt100bp_slop5.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/SegmentalDuplications/GRCh37_new_chainSelf_and_Segdups.ipynb.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_RTG_37.7.3_complexindel10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh37_HG001_RTG_37.7.3_snpswithin10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_RTG_37.7.3_snpswithin10bp_slop50.bed.gz |
|
19 |
GRCh38_gc75to80_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gc75to80_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gc15_slop50.bed.gz.sha256 |
|
19 |
GRCh38_gc25to30_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gc25to30_slop50.bed.gz |
|
19 |
GRCh38_gc60to65_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gc60to65_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/FunctionalRegions/GRCh38_notinrefseq_cds.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/v2.0-GRCh38-LowComplexity-README.txt.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gc85_slop50.bed.gz.sha256 |
|
19 |
GRCh38_gclt30orgt55_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gclt30orgt55_slop50.bed.gz |
|
19 |
GRCh38_HG004_GIABv3.3.2_complexandSVs.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG004_GIABv3.3.2_complexandSVs.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG004_GIABv3.3.2_snpswithin10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG005_GIABv3.3.2_comphetindel10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG005_GIABv3.3.2_snpswithin10bp_slop50.bed.gz.sha256 |
|
47 |
v2.0-GRCh38-GenomeSpecific-README.txt |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/v2.0-GRCh38-GenomeSpecific-README.txt |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG003_GIABv3.3.2_complexandSVs.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_SimpleRepeat_homopolymer_4to6_slop5.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_PG2016-1.0_complexindel10bp_slop50.bed.gz.sha256 |
|
37 |
findSimpleRegions_quad.py |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/findSimpleRegions_quad.py |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv3.3.2_comphetindel10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/v2.0-stratification-BEDs-README.txt.sha256 |
|
47 |
genome_specific.sh |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/genome_specific.sh |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/mappability/v2.0-GRCh38-mappability-README.txt.sha256 |
|
47 |
v2.0-GRCh37-FunctionalRegions-README.txt |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/FunctionalRegions/v2.0-GRCh37-FunctionalRegions-README.txt |
|
47 |
v2.0-GRCh37-FunctionalTechDifficult-README.txt |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/FunctionalTechnicallyDifficultRegions/v2.0-GRCh37-FunctionalTechDifficult-README.txt |
|
19 |
GRCh37_gclt25orgt65_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gclt25orgt65_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gclt25orgt65_slop50.bed.gz.sha256 |
|
19 |
GRCh37_gclt30orgt55_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gclt30orgt55_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/seqtk_gc.sh.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv3.3.2_complexandSVs_alldifficultregions.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_Generating_v4.1_excluded_beds.ipynb.sha256 |
|
19 |
GRCh37_gc65to70_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gc65to70_slop50.bed.gz |
|
19 |
GRCh37_lowmappabilityall.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/mappability/GRCh37_lowmappabilityall.bed.gz |
|
19 |
GRCh37_SimpleRepeat_imperfecthomopolgt10_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_SimpleRepeat_imperfecthomopolgt10_slop5.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_SimpleRepeat_imperfecthomopolgt10_slop5.bed.gz.sha256 |
|
19 |
GRCh37_HG002_GIABv3.3.2_snpswithin10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv3.3.2_snpswithin10bp_slop50.bed.gz |
|
19 |
GRCh37_SimpleRepeat_triTR_gt200_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_SimpleRepeat_triTR_gt200_slop5.bed.gz |
|
19 |
GRCh37_HG001_GIABv3.2.2_varswithin50bp.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_GIABv3.2.2_varswithin50bp.bed.gz |
|
19 |
GRCh37_HG004_GIABv3.3.2_complexindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG004_GIABv3.3.2_complexindel10bp_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG004_GIABv3.3.2_notin_complexandSVs_alldifficultregions.bed.gz.sha256 |
|
19 |
GRCh37_HG005_GIABv3.3.2_notin_complexandSVs_alldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG005_GIABv3.3.2_notin_complexandSVs_alldifficultregions.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/OtherDifficult/GRCh37_hg38_minimap2_asm20_N10_gt1contig_gt1kb.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_GIABv3.3.2_snpswithin10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh37_HG001_PG2016-1.0_comphetindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_PG2016-1.0_comphetindel10bp_slop50.bed.gz |
|
19 |
GRCh37_HG002_Tier1plusTier2_v0.6.1.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_Tier1plusTier2_v0.6.1.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/OtherDifficult/GRCh37_missing_and_multiple_alignments_of_GRCh38.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/findSimpleRegions_quad.py.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/SegmentalDuplications/GRCh37_Generating_v4.1_excluded_beds.ipynb.sha256 |
|
19 |
GRCh37_HG001_PG2016-1.0_comphetsnp10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_PG2016-1.0_comphetsnp10bp_slop50.bed.gz |
|
19 |
GRCh37_AllTandemRepeats_51to200bp_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_AllTandemRepeats_51to200bp_slop5.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_PG2016-1.0_snpswithin10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG003_GIABv3.3.2_complexindel10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv3.3.2_comphetindel10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh37_SimpleRepeat_homopolymer_7to11_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_SimpleRepeat_homopolymer_7to11_slop5.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/FunctionalTechnicallyDifficultRegions/v2.0-GRCh38-FunctionalTechDifficult-README.txt.sha256 |
|
19 |
GRCh37_alldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/union/GRCh37_alldifficultregions.bed.gz |
|
47 |
v2.0-GRCh37-Union-README.txt |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/union/v2.0-GRCh37-Union-README.txt |
|
47 |
v2.0-GRCh37-stratification-md5-checksums.txt |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/v2.0-GRCh37-stratification-md5-checksums.txt |
|
5 |
create_GRCh38_cds_bed.Rmd |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/FunctionalRegions/create_GRCh38_cds_bed.Rmd |
|
47 |
v2.0-GRCh38-LowComplexity-README.txt |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/v2.0-GRCh38-LowComplexity-README.txt |
|
19 |
GRCh38_HG004_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG004_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG004_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh38_HG005_GIABv3.3.2_notin_complexandSVs_alldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG005_GIABv3.3.2_notin_complexandSVs_alldifficultregions.bed.gz |
|
19 |
GRCh38_AllTandemRepeats_51to200bp_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_AllTandemRepeats_51to200bp_slop5.bed.gz |
|
47 |
v2.0-GRCh38-OtherDifficult-README.txt |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/OtherDifficult/v2.0-GRCh38-OtherDifficult-README.txt |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv4.1_inversions_slop25percent.bed.gz.sha256 |
|
19 |
GRCh38_HG001_GIABv3.3.2_snpswithin10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_GIABv3.3.2_snpswithin10bp_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_SimpleRepeat_diTR_11to50_slop5.bed.gz.sha256 |
|
19 |
GRCh38_SimpleRepeat_diTR_gt200_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_SimpleRepeat_diTR_gt200_slop5.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_SimpleRepeat_quadTR_51to200_slop5.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_SimpleRepeat_quadTR_20to50_slop5.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_SimpleRepeat_quadTR_gt200_slop5.bed.gz.sha256 |
|
47 |
seqtk_gc.sh |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/seqtk_gc.sh |
|
47 |
Merge_difficult_regions.sh |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/OtherDifficult/Merge_difficult_regions.sh |
|
47 |
Merge_difficult_regions.sh |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/union/Merge_difficult_regions.sh |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/FunctionalRegions/GRCh37_notinrefseq_union_cds.bed.gz.sha256 |
|
19 |
GRCh37_gc15to20_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gc15to20_slop50.bed.gz |
|
19 |
GRCh37_SimpleRepeat_triTR_15to50_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_SimpleRepeat_triTR_15to50_slop5.bed.gz |
|
19 |
GRCh37_HG001_GIABv3.3.2_RTG_PG_v3.3.2_SVs_notin_alldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_GIABv3.3.2_RTG_PG_v3.3.2_SVs_notin_alldifficultregions.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh37_HG002_GIABv4.1_complexindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv4.1_complexindel10bp_slop50.bed.gz |
|
19 |
GRCh37_HG001_GIABv3.3.2_complexandSVs.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_GIABv3.3.2_complexandSVs.bed.gz |
|
19 |
GRCh37_HG001_RTG_37.7.3_comphetsnp10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_RTG_37.7.3_comphetsnp10bp_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_SimpleRepeat_diTR_11to50_slop5.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_SimpleRepeat_diTR_51to200_slop5.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_SimpleRepeat_homopolymer_gt11_slop5.bed.gz.sha256 |
|
19 |
GRCh37_segdups.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/SegmentalDuplications/GRCh37_segdups.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/mappability/GRCh37_nonunique_l100_m2_e1.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gc75to80_slop50.bed.gz.sha256 |
|
19 |
GRCh38_gc85_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gc85_slop50.bed.gz |
|
47 |
v2.0-GRCh37-mappability-README.txt |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/mappability/v2.0-GRCh37-mappability-README.txt |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/FunctionalRegions/v2.0-GRCh38-FunctionalRegions-README.txt.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gc20to25_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/union/GRCh37_notinalldifficultregions.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/FunctionalRegions/GRCh38_refseq_cds.bed.gz.sha256 |
|
5 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/OtherDifficult/GRCh38_Generating_v4.1_excluded_beds.ipynb |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/OtherDifficult/GRCh38_L1H_gt500.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG003_GIABv3.3.2_snpswithin10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/grch38_seqtk_gc.sh.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/v2.0-GRCh38-GCcontent-README.txt.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_Generating_v4.1_excluded_beds.ipynb.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv3.3.2_notin_complexandSVs_alldifficultregions.bed.gz.sha256 |
|
19 |
GRCh38_HG004_GIABv3.3.2_complexindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG004_GIABv3.3.2_complexindel10bp_slop50.bed.gz |
|
19 |
GRCh38_HG005_GIABv3.3.2_complexindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG005_GIABv3.3.2_complexindel10bp_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv4.1_comphetindel10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv4.1_comphetsnp10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh38_HG002_GIABv4.1_complexindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv4.1_complexindel10bp_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv4.1_othercomplexwithin10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/trim_bed_to_three_fields.sh.sha256 |
|
19 |
GRCh38_allOtherDifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/OtherDifficult/GRCh38_allOtherDifficultregions.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/OtherDifficult/GRCh38_allOtherDifficultregions.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/SegmentalDuplications/GRCh38_Generating_v4.1_excluded_beds.ipynb.sha256 |
|
5 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/SegmentalDuplications/GRCh38_new_chainSelf_and_Segdups.ipynb |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_GIABv3.3.2_complexindel10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh38_HG002_Tier1plusTier2_v0.6.1.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_Tier1plusTier2_v0.6.1.bed.gz |
|
19 |
GRCh38_HG003_GIABv3.3.2_comphetindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG003_GIABv3.3.2_comphetindel10bp_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_AllTandemRepeats_51to200bp_slop5.bed.gz.sha256 |
|
19 |
GRCh38_AllTandemRepeats_gt10000bp_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_AllTandemRepeats_gt10000bp_slop5.bed.gz |
|
19 |
GRCh38_AllTandemRepeats_lt51bp_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_AllTandemRepeats_lt51bp_slop5.bed.gz |
|
19 |
GRCh38_AllTandemRepeatsandHomopolymers_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_AllTandemRepeatsandHomopolymers_slop5.bed.gz |
|
19 |
GRCh38_SimpleRepeat_diTR_51to200_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_SimpleRepeat_diTR_51to200_slop5.bed.gz |
|
19 |
GRCh38_SimpleRepeat_homopolymer_4to6_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_SimpleRepeat_homopolymer_4to6_slop5.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG003_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG003_GIABv3.3.2_complexandSVs_alldifficultregions.bed.gz.sha256 |
|
19 |
GRCh38_HG003_GIABv3.3.2_complexindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG003_GIABv3.3.2_complexindel10bp_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_SimpleRepeat_homopolymer_gt11_slop5.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_SimpleRepeat_homopolymer_7to11_slop5.bed.gz.sha256 |
|
19 |
GRCh38_SimpleRepeat_homopolymer_gt11_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_SimpleRepeat_homopolymer_gt11_slop5.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_RTG_37.7.3_comphetsnp10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh38_HG001_RTG_37.7.3_snpswithin10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_RTG_37.7.3_snpswithin10bp_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_notinAllTandemRepeatsandHomopolymers_slop5.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/findSimpleRegions_quad.py.sha256 |
|
19 |
GRCh38_HG002_GIABv3.2.2_varswithin50bp.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv3.2.2_varswithin50bp.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/v2.0-GRCh38-stratifications.tsv.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/SegmentalDuplications/v2.0-GRCh38-SegDups-README.txt.sha256 |
|
19 |
GRCh38_notinlowmappabilityall.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/mappability/GRCh38_notinlowmappabilityall.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/mappability/run_GEM_mappability_GRCh38.sh.sha256 |
|
19 |
GRCh38_notinalllowmapandsegdupregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/union/GRCh38_notinalllowmapandsegdupregions.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/mappability/GRCh37_nonunique_l250_m0_e0.bed.gz.sha256 |
|
19 |
GRCh37_notinalllowmapandsegdupregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/union/GRCh37_notinalllowmapandsegdupregions.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/union/GRCh37_alldifficultregions.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/union/Merge_difficult_regions.sh.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/FunctionalTechnicallyDifficultRegions/trim_bed_to_three_fields.sh.sha256 |
|
19 |
GRCh38_gc30to55_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gc30to55_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/OtherDifficult/GRCh38_Generating_v4.1_excluded_beds.ipynb.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/OtherDifficult/GRCh38_MHC.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv3.3.2_complexindel10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG004_GIABv3.3.2_notin_complexandSVs_alldifficultregions.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_GIABv3.2.2_varswithin50bp.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_GIABv3.3.2_RTG_PG_v3.3.2_SVs_notin_alldifficultregions.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_GIABv3.3.2_comphetindel10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG005_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh38_HG005_GIABv3.3.2_complexandSVs.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG005_GIABv3.3.2_complexandSVs.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG005_HG006_HG007_MetaSV_allsvs.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/OtherDifficult/GRCh38_contigs_lt500kb.bed.gz.sha256 |
|
19 |
GRCh38_gaps_slop15kb.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/OtherDifficult/GRCh38_gaps_slop15kb.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/OtherDifficult/GRCh38_gaps_slop15kb.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/OtherDifficult/Merge_difficult_regions_GRCh38.sh.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/OtherDifficult/v2.0-GRCh38-OtherDifficult-README.txt.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv4.1_complexindel10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv4.1_notin_complexandSVs_alldifficultregions.bed.gz.sha256 |
|
19 |
GRCh38_HG002_GIABv4.1_snpswithin10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv4.1_snpswithin10bp_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/SegmentalDuplications/GRCh38_gt5segdups_gt10kb_gt99percidentity.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/SegmentalDuplications/GRCh38_new_chainSelf_and_Segdups.ipynb.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh38_HG001_GIABv3.3.2_complexandSVs.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_GIABv3.3.2_complexandSVs.bed.gz |
|
19 |
GRCh38_HG001_GIABv3.3.2_complexindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_GIABv3.3.2_complexindel10bp_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG003_GIABv3.3.2_comphetindel10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/FindSimpleRepeats_GRCh38_v2.sh.sha256 |
|
19 |
GRCh38_notinchainSelf_gt10kb.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/SegmentalDuplications/GRCh38_notinchainSelf_gt10kb.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/SegmentalDuplications/GRCh38_notinchainSelf.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_GIABv3.3.2_snpswithin10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_AllTandemRepeats_201to10000bp_slop5.bed.gz.sha256 |
|
19 |
GRCh38_AllTandemRepeats_gt100bp_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_AllTandemRepeats_gt100bp_slop5.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_AllTandemRepeats_lt51bp_slop5.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_AllTandemRepeatsandHomopolymers_slop5.bed.gz.sha256 |
|
19 |
GRCh38_SimpleRepeat_diTR_11to50_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_SimpleRepeat_diTR_11to50_slop5.bed.gz |
|
19 |
GRCh38_notinsegdups.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/SegmentalDuplications/GRCh38_notinsegdups.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_PG2016-1.0_snpswithin10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh38_HG001_PacBio_MetaSV.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_PacBio_MetaSV.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_RTG_37.7.3_comphetindel10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh38_notinsegdups_gt10kb.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/SegmentalDuplications/GRCh38_notinsegdups_gt10kb.bed.gz |
|
19 |
GRCh38_SimpleRepeat_quadTR_gt200_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_SimpleRepeat_quadTR_gt200_slop5.bed.gz |
|
19 |
GRCh38_SimpleRepeat_triTR_51to200_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_SimpleRepeat_triTR_51to200_slop5.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_SimpleRepeat_triTR_51to200_slop5.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_RTG_37.7.3_complexindel10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh38_notinAllTandemRepeatsandHomopolymers_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_notinAllTandemRepeatsandHomopolymers_slop5.bed.gz |
|
19 |
GRCh38_notinalldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/union/GRCh38_notinalldifficultregions.bed.gz |
|
47 |
v2.0-GRCh38-Union-README.txt |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/union/v2.0-GRCh38-Union-README.txt |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/union/v2.0-GRCh38-Union-README.txt.sha256 |
|
5 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/Prepare%20Stratification%20BEDs%20for%20GitHub.ipynb |
|
47 |
v2.0-GRCh38-stratification-md5-checksums.txt |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/v2.0-GRCh38-stratification-md5-checksums.txt |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/v2.0-GRCh38-stratification-md5-checksums.txt.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/mappability/GRCh38_nonunique_l100_m2_e1.bed.gz.sha256 |
|
47 |
run_GEM_mappability_sort.sh |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/mappability/run_GEM_mappability_sort.sh |
|
47 |
trim_bed_to_three_fields.sh |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/FunctionalTechnicallyDifficultRegions/trim_bed_to_three_fields.sh |
|
47 |
grch38_seqtk_gc.sh |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/grch38_seqtk_gc.sh |
|
47 |
format_bed_after_remap.sh |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/format_bed_after_remap.sh |
|
47 |
genome_specific_GRCh38merge.sh |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/genome_specific_GRCh38merge.sh |
|
47 |
trim_bed_to_three_fields.sh |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/trim_bed_to_three_fields.sh |
|
47 |
FindSimpleRepeats_GRCh38_v2.sh |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/FindSimpleRepeats_GRCh38_v2.sh |
|
19 |
GRCh37_SimpleRepeat_diTR_11to50_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_SimpleRepeat_diTR_11to50_slop5.bed.gz |
|
19 |
GRCh37_alllowmapandsegdupregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/union/GRCh37_alllowmapandsegdupregions.bed.gz |
|
19 |
GRCh38_gc55to60_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gc55to60_slop50.bed.gz |
|
19 |
GRCh38_gc70to75_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gc70to75_slop50.bed.gz |
|
49 |
v2.0-GRCh37-stratifications.tsv |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/v2.0-GRCh37-stratifications.tsv |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_notinAllHomopolymers_gt6bp_imperfectgt10bp_slop5.bed.gz.sha256 |
|
19 |
GRCh37_HG005_GIABv3.3.2_complexandSVs.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG005_GIABv3.3.2_complexandSVs.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG005_GIABv3.3.2_complexindel10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG004_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_GIABv3.2.2_compoundhet_slop50.bed.gz.sha256 |
|
19 |
GRCh37_HG005_GIABv3.3.2_complexandSVs_alldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG005_GIABv3.3.2_complexandSVs_alldifficultregions.bed.gz |
|
19 |
GRCh37_HG001_PG2016-1.0_snpswithin10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_PG2016-1.0_snpswithin10bp_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG003_GIABv3.3.2_notin_complexandSVs_alldifficultregions.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv4.1_CNV_mrcanavarIllumina_CCShighcov_ONThighcov_intersection.bed.gz.sha256 |
|
19 |
GRCh38_contigs_lt500kb.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/OtherDifficult/GRCh38_contigs_lt500kb.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_PacBio_MetaSV.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_GIABv3.3.2_RTG_PG_v3.3.2_SVs_notin_alldifficultregions.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG005_HG006_HG007_MetaSV_allsvs.bed.gz.sha256 |
|
19 |
GRCh38_HG002_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz |
|
19 |
GRCh37_notinchainSelf_gt10kb.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/SegmentalDuplications/GRCh37_notinchainSelf_gt10kb.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gc70to75_slop50.bed.gz.sha256 |
|
19 |
GRCh37_gc75to80_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gc75to80_slop50.bed.gz |
|
19 |
GRCh37_SimpleRepeat_quadTR_20to50_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_SimpleRepeat_quadTR_20to50_slop5.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_SimpleRepeat_quadTR_51to200_slop5.bed.gz.sha256 |
|
19 |
GRCh37_HG002_GIABv4.1_complexandSVs.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv4.1_complexandSVs.bed.gz |
|
19 |
GRCh37_HG002_GIABv4.1_CNVsandSVs.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv4.1_CNVsandSVs.bed.gz |
|
19 |
GRCh37_HG002_GIABv4.1_CNV_mrcanavarIllumina_CCShighcov_ONThighcov_intersection.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv4.1_CNV_mrcanavarIllumina_CCShighcov_ONThighcov_intersection.bed.gz |
|
19 |
GRCh37_HG002_GIABv4.1_complexandSVs_alldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv4.1_complexandSVs_alldifficultregions.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv4.1_complexandSVs_alldifficultregions.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG004_GIABv3.3.2_snpswithin10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG005_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh37_allOtherDifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/OtherDifficult/GRCh37_allOtherDifficultregions.bed.gz |
|
19 |
GRCh37_hg38_minimap2_asm20_N10_gt1contig_gt1kb.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/OtherDifficult/GRCh37_hg38_minimap2_asm20_N10_gt1contig_gt1kb.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_HG003_HG004_allsvs.bed.gz.sha256 |
|
19 |
GRCh37_AllHomopolymers_gt6bp_imperfectgt10bp_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_AllHomopolymers_gt6bp_imperfectgt10bp_slop5.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_AllHomopolymers_gt6bp_imperfectgt10bp_slop5.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG003_GIABv3.3.2_comphetindel10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh37_chainSelf_gt10kb.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/SegmentalDuplications/GRCh37_chainSelf_gt10kb.bed.gz |
|
19 |
GRCh37_HG003_GIABv3.3.2_complexandSVs_alldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG003_GIABv3.3.2_complexandSVs_alldifficultregions.bed.gz |
|
19 |
GRCh37_HG003_GIABv3.3.2_notin_complexandSVs_alldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG003_GIABv3.3.2_notin_complexandSVs_alldifficultregions.bed.gz |
|
19 |
GRCh37_HG003_GIABv3.3.2_snpswithin10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG003_GIABv3.3.2_snpswithin10bp_slop50.bed.gz |
|
19 |
GRCh38_HG001_RTG_37.7.3_comphetindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_RTG_37.7.3_comphetindel10bp_slop50.bed.gz |
|
19 |
GRCh38_HG001_RTG_37.7.3_complexindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_RTG_37.7.3_complexindel10bp_slop50.bed.gz |
|
19 |
GRCh38_HG001_PG2016-1.0_comphetindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_PG2016-1.0_comphetindel10bp_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_RTG_37.7.3_snpswithin10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gc30to55_slop50.bed.gz.sha256 |
|
19 |
GRCh37_HG002_GIABv3.3.2_complexandSVs.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv3.3.2_complexandSVs.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv3.3.2_snpswithin10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh37_HG003_GIABv3.3.2_complexindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG003_GIABv3.3.2_complexindel10bp_slop50.bed.gz |
|
19 |
GRCh37_HG002_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz |
|
19 |
GRCh38_gc65to70_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gc65to70_slop50.bed.gz |
|
19 |
GRCh38_HG002_GIABv4.1_othercomplexwithin10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv4.1_othercomplexwithin10bp_slop50.bed.gz |
|
19 |
GRCh38_HG002_GIABv4.1_notin_complexandSVs_alldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv4.1_notin_complexandSVs_alldifficultregions.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_GIABv3.3.2_complexandSVs.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gc85_slop50.bed.gz.sha256 |
|
19 |
GRCh37_gc55to60_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gc55to60_slop50.bed.gz |
|
19 |
GRCh37_gc70to75_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gc70to75_slop50.bed.gz |
|
19 |
GRCh37_gc80to85_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gc80to85_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG004_GIABv3.3.2_complexandSVs.bed.gz.sha256 |
|
19 |
GRCh37_HG001_GIABv3.3.2_RTG_PG_v3.3.2_SVs_alldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_GIABv3.3.2_RTG_PG_v3.3.2_SVs_alldifficultregions.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv4.1_comphetindel10bp_slop50..bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv4.1_inversions_slop25percent.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG005_GIABv3.3.2_complexandSVs.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/OtherDifficult/GRCh37_VDJ.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv4.1_notin_complexandSVs_alldifficultregions.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG005_GIABv3.3.2_notin_complexandSVs_alldifficultregions.bed.gz.sha256 |
|
19 |
GRCh37_HG005_GIABv3.3.2_snpswithin10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG005_GIABv3.3.2_snpswithin10bp_slop50.bed.gz |
|
19 |
GRCh37_HG001_GIABv3.3.2_snpswithin10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_GIABv3.3.2_snpswithin10bp_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/Merge_difficult_regions.sh.sha256 |
|
37 |
findSimpleRegions_quad.py |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/findSimpleRegions_quad.py |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_PG2016-1.0_comphetsnp10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh37_HG003_GIABv3.3.2_complexandSVs.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG003_GIABv3.3.2_complexandSVs.bed.gz |
|
19 |
GRCh37_gt5segdups_gt10kb_gt99percidentity.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/SegmentalDuplications/GRCh37_gt5segdups_gt10kb_gt99percidentity.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_AllTandemRepeatsandHomopolymers_slop5.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_RTG_37.7.3_comphetsnp10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG004_GIABv3.3.2_comphetindel10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh37_notinsegdups.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/SegmentalDuplications/GRCh37_notinsegdups.bed.gz |
|
19 |
GRCh37_HG004_GIABv3.3.2_complexandSVs.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG004_GIABv3.3.2_complexandSVs.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_SimpleRepeat_diTR_gt200_slop5.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_SimpleRepeat_homopolymer_4to6_slop5.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_SimpleRepeat_homopolymer_7to11_slop5.bed.gz.sha256 |
|
19 |
GRCh37_notinlowmappabilityall.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/mappability/GRCh37_notinlowmappabilityall.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/mappability/run_GEM_mappability.sh.sha256 |
|
19 |
GRCh38_gc20to25_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gc20to25_slop50.bed.gz |
|
19 |
GRCh38_BadPromoters.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/FunctionalTechnicallyDifficultRegions/GRCh38_BadPromoters.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/FunctionalTechnicallyDifficultRegions/GRCh38_BadPromoters.bed.gz.sha256 |
|
19 |
GRCh38_gc15_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gc15_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gc70to75_slop50.bed.gz.sha256 |
|
47 |
v2.0-GRCh38-FunctionalRegions-README.txt |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/FunctionalRegions/v2.0-GRCh38-FunctionalRegions-README.txt |
|
19 |
GRCh38_segdups_gt10kb.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/SegmentalDuplications/GRCh38_segdups_gt10kb.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv3.3.2_complexandSVs.bed.gz.sha256 |
|
19 |
GRCh38_HG002_GIABv4.1_complexandSVs.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv4.1_complexandSVs.bed.gz |
|
19 |
GRCh38_HG001_GIABv3.3.2_RTG_PG_v3.3.2_SVs_alldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_GIABv3.3.2_RTG_PG_v3.3.2_SVs_alldifficultregions.bed.gz |
|
19 |
GRCh38_HG002_GIABv4.1_comphetindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv4.1_comphetindel10bp_slop50.bed.gz |
|
19 |
GRCh38_HG005_HG006_HG007_MetaSV_allsvs.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG005_HG006_HG007_MetaSV_allsvs.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG005_GIABv3.3.2_complexindel10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh38_chainSelf.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/SegmentalDuplications/GRCh38_chainSelf.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_AllTandemRepeats_gt100bp_slop5.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG003_GIABv3.3.2_complexindel10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/SegmentalDuplications/GRCh38_notinsegdups_gt10kb.bed.gz.sha256 |
|
19 |
GRCh38_segdups.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/SegmentalDuplications/GRCh38_segdups.bed.gz |
|
19 |
GRCh38_SimpleRepeat_triTR_15to50_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_SimpleRepeat_triTR_15to50_slop5.bed.gz |
|
19 |
GRCh38_HG002_GIABv3.3.2_complexandSVs.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv3.3.2_complexandSVs.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/union/GRCh38_notinalldifficultregions.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/union/Merge_difficult_regions_GRCh38.sh.sha256 |
|
47 |
Merge_difficult_regions.sh |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/Merge_difficult_regions.sh |
|
19 |
GRCh38_nonunique_l250_m0_e0.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/mappability/GRCh38_nonunique_l250_m0_e0.bed.gz |
|
47 |
run_GEM_mappability_sort_GRCh38.sh |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/mappability/run_GEM_mappability_sort_GRCh38.sh |
|
47 |
run_GEM_mappability.sh |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/mappability/run_GEM_mappability.sh |
|
47 |
format_bed_after_remap.sh |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/FunctionalTechnicallyDifficultRegions/format_bed_after_remap.sh |
|
47 |
Merge_difficult_regions_GRCh38.sh |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/OtherDifficult/Merge_difficult_regions_GRCh38.sh |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv3.2.2_varswithin50bp.bed.gz.sha256 |
|
0 |
NIH-NCBI hosted FTP site provided to facilitate user access. Files on the FTP site are subject to change whereas files on data.nist.gov archived version of the files. |
https://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/release |
|
33 |
create_GRCh37_cds_bed.pdf |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/FunctionalRegions/create_GRCh37_cds_bed.pdf |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/FunctionalTechnicallyDifficultRegions/GRCh37_BadPromoters.gz.sha256 |
|
19 |
GRCh37_gc85_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gc85_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gclt30orgt55_slop50.bed.gz.sha256 |
|
47 |
v2.0-GRCh37-GCcontent-README.txt |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/v2.0-GRCh37-GCcontent-README.txt |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/v2.0-GRCh37-GCcontent-README.txt.sha256 |
|
5 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_Generating_v4.1_excluded_beds.ipynb |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gc20to25_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gc25to30_slop50.bed.gz.sha256 |
|
19 |
GRCh37_gc60to65_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gc60to65_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gc75to80_slop50.bed.gz.sha256 |
|
19 |
GRCh37_HG002_GIABv4.1_CNV_CCSandONT_elliptical_outlier.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv4.1_CNV_CCSandONT_elliptical_outlier.bed.gz |
|
19 |
GRCh37_HG002_GIABv3.3.2_complexindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv3.3.2_complexindel10bp_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv3.3.2_complexindel10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_SimpleRepeat_quadTR_gt200_slop5.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_GIABv3.2.2_compoundhet_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv4.1_CNV_mrcanavarIllumina_CCShighcov_ONThighcov_intersection.bed.gz.sha256 |
|
19 |
GRCh37_notinAllHomopolymers_gt6bp_imperfectgt10bp_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_notinAllHomopolymers_gt6bp_imperfectgt10bp_slop5.bed.gz |
|
19 |
GRCh37_HG002_GIABv4.1_comphetindel10bp_slop50..bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv4.1_comphetindel10bp_slop50..bed.gz |
|
5 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/OtherDifficult/GRCh37_Generating_v4.1_excluded_beds.ipynb |
|
19 |
GRCh37_L1H_gt500.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/OtherDifficult/GRCh37_L1H_gt500.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_GIABv3.3.2_comphetindel10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv4.1_complexindel10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/OtherDifficult/GRCh37_MHC.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv4.1_snpswithin10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh37_hg38_minimap2_asm20_N10_nocovgt1kb.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/OtherDifficult/GRCh37_hg38_minimap2_asm20_N10_nocovgt1kb.bed.gz |
|
19 |
GRCh37_HG002_HG003_HG004_allsvs.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_HG003_HG004_allsvs.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_Tier1plusTier2_v0.6.1.bed.gz.sha256 |
|
19 |
GRCh37_HG002_expanded_150_Tier1plusTier2_v0.6.1.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_expanded_150_Tier1plusTier2_v0.6.1.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_PG2016-1.0_comphetindel10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh37_HG001_PG2016-1.0_complexindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_PG2016-1.0_complexindel10bp_slop50.bed.gz |
|
19 |
GRCh37_AllTandemRepeats_201to10000bp_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_AllTandemRepeats_201to10000bp_slop5.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/SegmentalDuplications/GRCh37_chainSelf.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG003_GIABv3.3.2_complexandSVs_alldifficultregions.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_AllTandemRepeats_lt51bp_slop5.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/SegmentalDuplications/GRCh37_notinchainSelf_gt10kb.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv3.2.2_compoundhet_slop50.bed.gz.sha256 |
|
19 |
GRCh37_SimpleRepeat_diTR_gt200_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_SimpleRepeat_diTR_gt200_slop5.bed.gz |
|
19 |
GRCh37_SimpleRepeat_homopolymer_4to6_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_SimpleRepeat_homopolymer_4to6_slop5.bed.gz |
|
47 |
v2.0-GRCh38-FunctionalTechDifficult-README.txt |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/FunctionalTechnicallyDifficultRegions/v2.0-GRCh38-FunctionalTechDifficult-README.txt |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/union/GRCh37_alllowmapandsegdupregions.bed.gz.sha256 |
|
19 |
GRCh37_notinalldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/union/GRCh37_notinalldifficultregions.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/v2.0-GRCh37-stratification-md5-checksums.txt.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/v2.0-GRCh37-stratifications.tsv.sha256 |
|
19 |
GRCh38_HG002_GIABv4.1_CNV_CCSandONT_elliptical_outlier.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv4.1_CNV_CCSandONT_elliptical_outlier.bed.gz |
|
19 |
GRCh38_HG002_GIABv3.3.2_complexindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv3.3.2_complexindel10bp_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv3.3.2_snpswithin10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG003_GIABv3.3.2_notin_complexandSVs_alldifficultregions.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG004_GIABv3.3.2_comphetindel10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gclt30orgt55_slop50.bed.gz.sha256 |
|
47 |
v2.0-GRCh38-GCcontent-README.txt |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/v2.0-GRCh38-GCcontent-README.txt |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv3.3.2_complexandSVs_alldifficultregions.bed.gz.sha256 |
|
19 |
GRCh38_HG002_GIABv4.1_CNV_gt2assemblycontigs_ONTCanu_ONTFlye_CCSCanu.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv4.1_CNV_gt2assemblycontigs_ONTCanu_ONTFlye_CCSCanu.bed.gz |
|
19 |
GRCh38_HG001_GIABv3.2.2_varswithin50bp.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_GIABv3.2.2_varswithin50bp.bed.gz |
|
19 |
GRCh38_HG001_GIABv3.3.2_RTG_PG_v3.3.2_SVs_notin_alldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_GIABv3.3.2_RTG_PG_v3.3.2_SVs_notin_alldifficultregions.bed.gz |
|
19 |
GRCh38_HG005_GIABv3.3.2_comphetindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG005_GIABv3.3.2_comphetindel10bp_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG005_GIABv3.3.2_complexandSVs_alldifficultregions.bed.gz.sha256 |
|
19 |
GRCh38_HG005_GIABv3.3.2_snpswithin10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG005_GIABv3.3.2_snpswithin10bp_slop50.bed.gz |
|
19 |
GRCh38_HG002_GIABv4.1_comphetsnp10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv4.1_comphetsnp10bp_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/v2.0-GRCh38-GenomeSpecific-README.txt.sha256 |
|
19 |
GRCh38_HG002_GIABv4.1_inversions_slop25percent.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv4.1_inversions_slop25percent.bed.gz |
|
19 |
GRCh38_chainSelf_gt10kb.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/SegmentalDuplications/GRCh38_chainSelf_gt10kb.bed.gz |
|
19 |
GRCh38_gt5segdups_gt10kb_gt99percidentity.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/SegmentalDuplications/GRCh38_gt5segdups_gt10kb_gt99percidentity.bed.gz |
|
19 |
GRCh38_HG002_expanded_150__Tier1plusTier2_v0.6.1.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_expanded_150__Tier1plusTier2_v0.6.1.bed.gz |
|
19 |
GRCh38_notinchainSelf.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/SegmentalDuplications/GRCh38_notinchainSelf.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_SimpleRepeat_diTR_51to200_slop5.bed.gz.sha256 |
|
19 |
GRCh38_HG003_GIABv3.3.2_complexandSVs_alldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG003_GIABv3.3.2_complexandSVs_alldifficultregions.bed.gz |
|
19 |
GRCh38_HG003_GIABv3.3.2_notin_complexandSVs_alldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG003_GIABv3.3.2_notin_complexandSVs_alldifficultregions.bed.gz |
|
19 |
GRCh38_HG001_RTG_37.7.3_comphetsnp10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_RTG_37.7.3_comphetsnp10bp_slop50.bed.gz |
|
19 |
GRCh38_SimpleRepeat_triTR_gt200_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_SimpleRepeat_triTR_gt200_slop5.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_SimpleRepeat_triTR_gt200_slop5.bed.gz.sha256 |
|
19 |
GRCh38_HG002_GIABv3.2.2_compoundhet_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv3.2.2_compoundhet_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/Prepare%20Stratification%20BEDs%20for%20GitHub.ipynb.sha256 |
|
49 |
v2.0-GRCh38-stratifications.tsv |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/v2.0-GRCh38-stratifications.tsv |
|
47 |
v2.0-stratification-BEDs-README.txt |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/v2.0-stratification-BEDs-README.txt |
|
0 |
|
https://doi.org/10.18434/M32190 |
|
47 |
v2.0-GRCh38-SegDups-README.txt |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/SegmentalDuplications/v2.0-GRCh38-SegDups-README.txt |
|
19 |
GRCh38_lowmappabilityall.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/mappability/GRCh38_lowmappabilityall.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/mappability/GRCh38_lowmappabilityall.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/mappability/GRCh38_nonunique_l250_m0_e0.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/union/GRCh38_alllowmapandsegdupregions.bed.gz.sha256 |
|
47 |
make_all_and_notin_beds.sh |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/mappability/make_all_and_notin_beds.sh |
|
19 |
GRCh38_HG002_GIABv3.3.2_snpswithin10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv3.3.2_snpswithin10bp_slop50.bed.gz |
|
19 |
GRCh38_HG002_GIABv3.3.2_complexandSVs_alldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv3.3.2_complexandSVs_alldifficultregions.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv4.1_CNV_gt2assemblycontigs_ONTCanu_ONTFlye_CCSCanu.bed.gz.sha256 |
|
19 |
GRCh38_HG004_GIABv3.3.2_complexandSVs_alldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG004_GIABv3.3.2_complexandSVs_alldifficultregions.bed.gz |
|
19 |
GRCh37_HG002_GIABv3.3.2_notin_complexandSVs_alldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv3.3.2_notin_complexandSVs_alldifficultregions.bed.gz |
|
19 |
GRCh37_HG004_GIABv3.3.2_complexandSVs_alldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG004_GIABv3.3.2_complexandSVs_alldifficultregions.bed.gz |
|
19 |
GRCh37_notinAllTandemRepeatsandHomopolymers_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_notinAllTandemRepeatsandHomopolymers_slop5.bed.gz |
|
19 |
GRCh37_HG005_GIABv3.3.2_comphetindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG005_GIABv3.3.2_comphetindel10bp_slop50.bed.gz |
|
19 |
GRCh37_HG002_GIABv4.1_notin_complexandSVs_alldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv4.1_notin_complexandSVs_alldifficultregions.bed.gz |
|
19 |
GRCh37_HG001_GIABv3.3.2_complexindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_GIABv3.3.2_complexindel10bp_slop50.bed.gz |
|
19 |
GRCh37_missing_and_multiple_alignments_of_GRCh38.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/OtherDifficult/GRCh37_missing_and_multiple_alignments_of_GRCh38.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/FindSimpleRepeats_v2.sh.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG003_GIABv3.3.2_snpswithin10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh37_SimpleRepeat_homopolymer_gt11_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_SimpleRepeat_homopolymer_gt11_slop5.bed.gz |
|
19 |
GRCh38_notinrefseq_cds.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/FunctionalRegions/GRCh38_notinrefseq_cds.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_GIABv3.3.2_RTG_PG_v3.3.2_SVs_alldifficultregions.bed.gz.sha256 |
|
19 |
GRCh38_HG001_GIABv3.3.2_comphetindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_GIABv3.3.2_comphetindel10bp_slop50.bed.gz |
|
19 |
GRCh38_HG002_GIABv4.1_CNV_mrcanavarIllumina_CCShighcov_ONThighcov_intersection.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv4.1_CNV_mrcanavarIllumina_CCShighcov_ONThighcov_intersection.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv4.1_complexandSVs_alldifficultregions.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_SimpleRepeat_imperfecthomopolgt10_slop5.bed.gz.sha256 |
|
19 |
GRCh38_HG001_PG2016-1.0_snpswithin10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_PG2016-1.0_snpswithin10bp_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_SimpleRepeat_triTR_15to50_slop5.bed.gz.sha256 |
|
19 |
GRCh38_notinAllHomopolymers_gt6bp_imperfectgt10bp_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_notinAllHomopolymers_gt6bp_imperfectgt10bp_slop5.bed.gz |
|
19 |
GRCh38_HG002_GIABv3.3.2_comphetindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv3.3.2_comphetindel10bp_slop50.bed.gz |
|
19 |
GRCh37_HG002_GIABv4.1_CNV_gt2assemblycontigs_ONTCanu_ONTFlye_CCSCanu.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG002_GIABv4.1_CNV_gt2assemblycontigs_ONTCanu_ONTFlye_CCSCanu.bed.gz |
|
19 |
GRCh38_HG001_PG2016-1.0_complexindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_PG2016-1.0_complexindel10bp_slop50.bed.gz |
|
19 |
GRCh37_HG001_PacBio_MetaSV.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_PacBio_MetaSV.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv4.1_CNVsandSVs.bed.gz.sha256 |
|
19 |
GRCh38_HG004_GIABv3.3.2_comphetindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG004_GIABv3.3.2_comphetindel10bp_slop50.bed.gz |
|
19 |
GRCh38_HG001_GIABv3.2.2_compoundhet_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_GIABv3.2.2_compoundhet_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/FunctionalRegions/GRCh37_refseq_cds.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/FunctionalRegions/create_GRCh37_cds_bed.pdf.sha256 |
|
19 |
GRCh37_gc20to25_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GCcontent/GRCh37_gc20to25_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_SimpleRepeat_quadTR_20to50_slop5.bed.gz.sha256 |
|
19 |
GRCh37_HG004_GIABv3.3.2_snpswithin10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG004_GIABv3.3.2_snpswithin10bp_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG005_GIABv3.3.2_comphetindel10bp_slop50.bed.gz.sha256 |
|
19 |
GRCh37_HG005_HG006_HG007_MetaSV_allsvs.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG005_HG006_HG007_MetaSV_allsvs.bed.gz |
|
47 |
v2.0-GRCh37-GenomeSpecific-README.txt |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/v2.0-GRCh37-GenomeSpecific-README.txt |
|
5 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/SegmentalDuplications/GRCh37_Generating_v4.1_excluded_beds.ipynb |
|
19 |
GRCh37_AllTandemRepeats_gt10000bp_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/GRCh37_AllTandemRepeats_gt10000bp_slop5.bed.gz |
|
19 |
GRCh37_notinchainSelf.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/SegmentalDuplications/GRCh37_notinchainSelf.bed.gz |
|
19 |
GRCh37_HG001_RTG_37.7.3_complexindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG001_RTG_37.7.3_complexindel10bp_slop50.bed.gz |
|
19 |
GRCh37_HG004_GIABv3.3.2_comphetindel10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/GenomeSpecific/GRCh37_HG004_GIABv3.3.2_comphetindel10bp_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/SegmentalDuplications/GRCh38_segdups_gt10kb.bed.gz.sha256 |
|
19 |
GRCh38_gclt25orgt65_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GCcontent/GRCh38_gclt25orgt65_slop50.bed.gz |
|
19 |
GRCh38_HG003_GIABv3.3.2_snpswithin10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG003_GIABv3.3.2_snpswithin10bp_slop50.bed.gz |
|
19 |
GRCh38_HG004_GIABv3.3.2_notin_complexandSVs_alldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG004_GIABv3.3.2_notin_complexandSVs_alldifficultregions.bed.gz |
|
19 |
GRCh38_HG001_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz |
|
19 |
GRCh38_HG005_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG005_GIABv3.3.2_comphetsnp10bp_slop50.bed.gz |
|
19 |
GRCh38_HG005_GIABv3.3.2_complexandSVs_alldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG005_GIABv3.3.2_complexandSVs_alldifficultregions.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv4.1_complexandSVs.bed.gz.sha256 |
|
19 |
GRCh38_HG002_GIABv4.1_complexandSVs_alldifficultregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv4.1_complexandSVs_alldifficultregions.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG005_GIABv3.3.2_notin_complexandSVs_alldifficultregions.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/SegmentalDuplications/GRCh38_chainSelf_gt10kb.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_HG003_HG004_allsvs.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_expanded_150__Tier1plusTier2_v0.6.1.bed.gz.sha256 |
|
19 |
GRCh38_HG001_PG2016-1.0_comphetsnp10bp_slop50.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_PG2016-1.0_comphetsnp10bp_slop50.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG001_PG2016-1.0_comphetsnp10bp_slop50.bed.gz.sha256 |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_SimpleRepeat_diTR_gt200_slop5.bed.gz.sha256 |
|
19 |
GRCh38_HG003_GIABv3.3.2_complexandSVs.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG003_GIABv3.3.2_complexandSVs.bed.gz |
|
19 |
GRCh38_SimpleRepeat_homopolymer_7to11_slop5.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/LowComplexity/GRCh38_SimpleRepeat_homopolymer_7to11_slop5.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/GenomeSpecific/GRCh38_HG002_GIABv3.2.2_compoundhet_slop50.bed.gz.sha256 |
|
47 |
FindSimpleRepeats_v2.sh |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/LowComplexity/FindSimpleRepeats_v2.sh |
|
19 |
GRCh38_alllowmapandsegdupregions.bed.gz |
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/union/GRCh38_alllowmapandsegdupregions.bed.gz |
|
47 |
|
https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh38/OtherDifficult/GRCh38_VDJ.bed.gz.sha256 |