Description
A database providing information on the structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data.
Genomes FTP site FAQ at https://www.ncbi.nlm.nih.gov/genome/doc/ftpfaq/
Resources
| Name | Format | Description | Link |
|---|---|---|---|
| Genomes FTP Site | HTML | The genomes FTP site offers a consistent core set of files for the genome sequence and annotation products of all organisms and assemblies in scope. It supports download needs such as: Retrieve the unmasked or soft-masked genome sequence for a specific genome assembly Retrieve GenBank or RefSeq Gene, RNA and protein annotation for a specific organism and a specific assembly, or a specific RefSeq annotation release Retrieve annotation in GenBank flat-file, GFF or GTF format Matching sequence identifiers in FASTA & GFF or GTF files to facilitate RNA-Seq and other analyses Confirm downloaded content is complete using provided md5checksums | Open resource |
| Prokaryotic ANI Report (FTP file) | Text | Average Nucleotide Identity (ANI) data for prokaryote genome assemblies | Open resource |