Genome Assembly Data

Description

A database providing information on the structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data. Genomes FTP site FAQ at https://www.ncbi.nlm.nih.gov/genome/doc/ftpfaq/

Resources

Name Format Description Link
47 Average Nucleotide Identity (ANI) data for prokaryote genome assemblies https://ftp.ncbi.nlm.nih.gov/genomes/ASSEMBLY_REPORTS/ANI_report_prokaryotes.txt
21 The genomes FTP site offers a consistent core set of files for the genome sequence and annotation products of all organisms and assemblies in scope. It supports download needs such as: Retrieve the unmasked or soft-masked genome sequence for a specific genome assembly Retrieve GenBank or RefSeq Gene, RNA and protein annotation for a specific organism and a specific assembly, or a specific RefSeq annotation release Retrieve annotation in GenBank flat-file, GFF or GTF format Matching sequence identifiers in FASTA & GFF or GTF files to facilitate RNA-Seq and other analyses Confirm downloaded content is complete using provided md5checksums https://ftp.ncbi.nlm.nih.gov/genomes/

Tags

  • dataset
  • genomics
  • genetics

Topics

Categories