FHM reference genome, annotation, and all associated DNA and RNA-sequencing data
Description
The dataset contains the full fathead minnow (FHM) reference genome and annotation data as well all DNA sequencing data (PacBio long reads and Illumina paired-end reads) and RNA-seq data that were used to create the fathead minnow genome reference.
This dataset is associated with the following publication:
Martinson, J., D. Bencic, G. Toth, R. Flick, M. Kostich, M.J. See, D. Lattier, A. Biales, and W. Huang. De Novo Assembly of the Nearly Complete Fathead Minnow Reference Genome Reveals a Repetitive but Compact Genome. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY. Society of Environmental Toxicology and Chemistry, Pensacola, FL, USA, 41(2): 448-461, (2022).
Resources
| Name |
Format |
Description |
Link |
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0 |
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https://www.ncbi.nlm.nih.gov/bioproject/PRJNA565199/ |
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0 |
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https://www.ncbi.nlm.nih.gov/biosample/SAMN12875914/ |
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0 |
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https://www.ncbi.nlm.nih.gov/assembly/GCF_016745375.1/ |
Tags
- complete-genome
- fathead-minnows
- clean-water-act
- aquatic-toxicity
- zebrafish