Enhancement of RNA from FFPE v27.2

Description

This data set is composed of Tables, Figures, zip file containing the whole manuscript individual datasets. This dataset is associated with the following publication: Wehmas, L., C. Wood, B. Chorley, C. Yauk, G. Nelson, and S. Hester. Enhanced Quality Metrics for Assessing RNA Derived From Archival Formalin-Fixed Paraffin-Embedded Tissue Samples. TOXICOLOGICAL SCIENCES. Society of Toxicology, RESTON, VA, 170(2): 357-373, (2019).

Resources

Name Format Description Link
53 Table_S3_RNA_and_RNA_quality_20171031_clean.xlsx https://pasteur.epa.gov/uploads/10.23719/1506036/Table_S3_RNA_and_RNA_quality_20171031_clean.xlsx
53 Table_1_DEG_overlap_20171024.xlsx https://pasteur.epa.gov/uploads/10.23719/1506036/Table_1_DEG_overlap_20171024.xlsx
53 Table_S12_Upstream_regulator_rank_20171031.xlsx https://pasteur.epa.gov/uploads/10.23719/1506036/Table_S12_Upstream_regulator_rank_20171031.xlsx
53 Table_S1_triplex_RT-qPCR_primers_20170829.xlsx https://pasteur.epa.gov/uploads/10.23719/1506036/Table_S1_triplex_RT-qPCR_primers_20170829.xlsx
53 Table_2_IPA_overlap_20170731.xlsx https://pasteur.epa.gov/uploads/10.23719/1506036/Table_2_IPA_overlap_20170731.xlsx
53 Table_S5_sequencing_quality_metrics_20171031_clean.xlsx https://pasteur.epa.gov/uploads/10.23719/1506036/Table_S5_sequencing_quality_metrics_20171031_clean.xlsx
53 Table_S9_raw_normalized_biomarker_counts_20171031.xlsx https://pasteur.epa.gov/uploads/10.23719/1506036/Table_S9_raw_normalized_biomarker_counts_20171031.xlsx
53 Table_S2_Library_prep_fragmentation_times_20170731.xlsx https://pasteur.epa.gov/uploads/10.23719/1506036/Table_S2_Library_prep_fragmentation_times_20170731.xlsx
10 Enhancement%20of%20RNA%20from%20FFPE_v27.2_clean_20171115.docx https://pasteur.epa.gov/uploads/10.23719/1506036/Enhancement%20of%20RNA%20from%20FFPE_v27.2_clean_20171115.docx
53 Table_S13_Casual_network_analysis_20171031.xlsx https://pasteur.epa.gov/uploads/10.23719/1506036/Table_S13_Casual_network_analysis_20171031.xlsx
10 Enhancement%20of%20RNA%20from%20FFPE_v27.2_marked_20171115.docx https://pasteur.epa.gov/uploads/10.23719/1506036/Enhancement%20of%20RNA%20from%20FFPE_v27.2_marked_20171115.docx
53 Table_S4_Actb_amplicon_summary_20170731.xlsx https://pasteur.epa.gov/uploads/10.23719/1506036/Table_S4_Actb_amplicon_summary_20170731.xlsx
53 Table_S7_differentially_expressed_genes_20171031.xlsx https://pasteur.epa.gov/uploads/10.23719/1506036/Table_S7_differentially_expressed_genes_20171031.xlsx
53 Table_S8_overlapping_deg_lists_vs_fr_20171031.xlsx https://pasteur.epa.gov/uploads/10.23719/1506036/Table_S8_overlapping_deg_lists_vs_fr_20171031.xlsx
53 Table_S10_Canonical_pathways_ranked_20171031_rev.xlsx https://pasteur.epa.gov/uploads/10.23719/1506036/Table_S10_Canonical_pathways_ranked_20171031_rev.xlsx
57 Wehmas_to_Linda_Adams%20Fig%26text%26tables.zip https://pasteur.epa.gov/uploads/10.23719/1506036/Wehmas_to_Linda_Adams%20Fig%26text%26tables.zip
53 Table_S6_total_and_unique_raw_gene_ct_summary_20171031.xlsx https://pasteur.epa.gov/uploads/10.23719/1506036/Table_S6_total_and_unique_raw_gene_ct_summary_20171031.xlsx
53 Table_S11_Linear_regression_analysis_pathway_upstream_regulators_20171031.xlsx https://pasteur.epa.gov/uploads/10.23719/1506036/Table_S11_Linear_regression_analysis_pathway_upstream_regulators_20171031.xlsx

Tags

  • quality-metrics

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