Description
These spreadsheets contain the underlying data, calculations, and R code for the figures of the manuscript "Persistent gene expression and DNA methylation alterations linked to carcinogenic effects of dichloroacetic acid". The first tab of every spreadsheet contains descriptions of the data (metadata). For clarifying questions regarding the data, please contact Dr. Brian Chorley (EPA-ORD) at chorley.brian@epa.gov. If you require a review token for the sequencing datasets located in the GEO links (RNAseq and RRBS), please contact Dr. Chorley.
This dataset is associated with the following publication:
Carswell, G., J. Chamberlin, B. Bennett, P. Bushel, and B. Chorley. Persistent gene expression and DNA methylation alterations linked to carcinogenic effects of dichloroacetic acid. Frontiers in Oncology. Frontiers, Lausanne, SWITZERLAND, 14: 1389634, (2024).
Resources
| Name | Format | Description | Link |
|---|---|---|---|
| Figure 3A_data.xlsx | XLS | Figure%203A_data.xlsx | Open resource |
| Figure 3B_data.xlsx | XLS | Figure%203B_data.xlsx | Open resource |
| Figure 4_data.xlsx | XLS | Figure%204_data.xlsx | Open resource |
| Figure 6_data.xlsx | XLS | Figure%206_data.xlsx | Open resource |
| Figure 8_data.xlsx | XLS | Figure%208_data.xlsx | Open resource |
| Figures 2_5_7_9A_B_data.xlsx | XLS | Figures%202_5_7_9A_B_data.xlsx | Open resource |
| Figures 5C_7C_9C_data.xlsx | XLS | Figures%205C_7C_9C_data.xlsx | Open resource |
| https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242661 | Unknown | Open resource | |
| https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242664 | Unknown | Open resource | |
| https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242665 | Unknown | Open resource |