Database Infrastructure for Mass Spectrometry - Per- and Polyfluoroalkyl Substances

Description

Data here contain and describe an open-source structured query language (SQLite) portable database containing high resolution mass spectrometry data (MS1 and MS2) for per- and polyfluorinated alykl substances (PFAS) and associated metadata regarding their measurement techniques, quality assurance metrics, and the samples from which they were produced. These data are stored in a format adhering to the Database Infrastructure for Mass Spectrometry (DIMSpec) project. That project produces and uses databases like this one, providing a complete toolkit for non-targeted analysis. See more information about the full DIMSpec code base - as well as these data for demonstration purposes - at GitHub (https://github.com/usnistgov/dimspec) or view the full User Guide for DIMSpec (https://pages.nist.gov/dimspec/docs).Files of most interest contained here include the database file itself (dimspec_nist_pfas.sqlite) as well as an entity relationship diagram (ERD.png) and data dictionary (DIMSpec for PFAS_1.0.1.20230615_data_dictionary.json) to elucidate the database structure and assist in interpretation and use.

Resources

Name Format Description Link
Data Dictionary Unknown A data dictionary in javascript object notation (JSON) to accompany the dimspec_nist_pfas.sqlite database file. Open resource
DIMSpec for PFAS Unknown A DIMSpec compliant database of high-resolution accurate mass spectrometry data for per- and polyfluorinated alkyl substances. Open resource
Entity Relationship Diagram Unknown The entity relationship diagram (ERD) associated with the dimspec_nist_pfas.sqlite database file. Open resource
Use Licence Unknown The license for use and reuse accompanying these data. Open resource
README Unknown The README file containing information about this dataset, and links to other resources supporting it. Open resource

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