Data from: A single-cell immune atlas of primary and secondary lymphoid organs in pigs

Description

Data objects used for analysis in "A single-cell immune atlas of primary and secondary lymphoid organs in pigs" by Wiarda et al. Data objects include .cloupe files for interactive query in Loupe Cell Browser (10X Genomics), .rds files to download for use with a Shiny app for data query, and .h5seurat files for computational query of data. Briefly, cells were isolated from bone marrow, thymus, lymph node, and spleen of two pigs and processed for single-cell RNA sequencing. Single-cell RNA sequencing data was analyzed to identify cell types in each tissue and perform comparisons across tissues and across datasets.

Resources

Name Format Description Link
sp.cloupe Unknown Open resource
bm.cloupe Unknown Open resource
ln.cloupe Unknown Open resource
th.cloupe Unknown Open resource
PigImmuneMultiTissue_Spleen_CellTypeAnnotated_HBBhiRemoved.h5Seurat Unknown Open resource
PigImmuneMultiTissue_AllTissues_CellTypeMerge_Myeloid.h5Seurat Unknown Open resource
PigImmuneMultiTissue_BoneMarrow_CellTypeAnnotated_HBBhiRemoved.h5Seurat Unknown Open resource
PigImmuneMultiTissue_AllTissues_CellTypeMerge_B.h5Seurat Unknown Open resource
PigImmuneMultiTissue_LymphNode_CellTypeAnnotated.h5Seurat Unknown Open resource
PigImmuneMultiTissue_Thymus_CellTypeAnnotated.h5Seurat Unknown Open resource
PigImmuneMultiTissue_AllTissues_CellTypeMerge_TILC.h5Seurat Unknown Open resource
Thymus_shiny.rds Unknown Open resource
Lymph_Node_mapped_shiny.rds Unknown Open resource
Spleen_shiny.rds Unknown Open resource
Spleen_mapped_shiny.rds Unknown Open resource
Thymus_mapped_shiny.rds Unknown Open resource
Bone_Marrow_shiny.rds Unknown Open resource
Lymph_Node_shiny.rds Unknown Open resource

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