Data for: Variant filters using segregation information improve mapping of nectar-production genes in sunflower (Helianthus annuus L.)
Description
- Genotypic Data (VCFs):
- All VCF files contain imputed, biallelic SNPs derived from the same population but differ in the filtering strategies applied.
Approach1_...vcf.gz: Filtered using hard thresholds (minQ ≥ 100, max Missing ≤ 0.75, MAF ≥ 0.05, inferred single copy).Approach2_...vcf.gz: Applies the same hard filters as Approach 1, with an additional Chi-Square filter (p-value ≤ 0.1).Approach3_...vcf.gz: Filtered using only a Chi-Square filter (p-value ≤ 0.1) on imputed, biallelic SNPs.
- Phenotypic Data (XLSX):
nectar_phenotype.xlsx: Contains phenotypic measurements for the population, including individual identifiers (ID) and nectar volume data (nectar_mm_T, nectar_mm).
Resources
| Name |
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Description |
Link |
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53 |
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https://ndownloader.figshare.com/files/54026390 |
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19 |
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https://ndownloader.figshare.com/files/54026396 |
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0 |
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https://ndownloader.figshare.com/files/54026393 |
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19 |
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https://ndownloader.figshare.com/files/54026399 |
Tags
- genomic-techniques
- genome-sequencing
- crop-genetics
- data-management
- sunflower