Data and code files for co-occurrence modeling project

Description

Files included are original data inputs on stream fishes (fish_data_OEPA_2012.csv), water chemistry (OEPA_WATER_2012.csv), geographic data (NHD_Plus_StreamCat); modeling files for generating predictions from the original data, including the R code (MVP_R_Final.txt) and Stan code (MV_Probit_Stan_Final.txt); and the model output file containing predictions for all NHDPlus catchments in the East Fork Little Miami River watershed (MVP_EFLMR_cooc_Final). This dataset is associated with the following publication: Martin, R., E. Waits, and C. Nietch. Empirically-based modeling and mapping to consider the co-occurrence of ecological receptors and stressors. SCIENCE OF THE TOTAL ENVIRONMENT. Elsevier BV, AMSTERDAM, NETHERLANDS, 613(614): 1228-1239, (2018).

Resources

Name Format Description Link
53 fish_data_OEPA_2012.csv https://pasteur.epa.gov/uploads/10.23719/1407576/fish_data_OEPA_2012.csv
53 OEPA_WATER_2012.csv https://pasteur.epa.gov/uploads/10.23719/1407576/OEPA_WATER_2012.csv
53 NHD_Plus_StreamCat.csv https://pasteur.epa.gov/uploads/10.23719/1407576/NHD_Plus_StreamCat.csv
47 MVP_R_Final.txt https://pasteur.epa.gov/uploads/10.23719/1407576/MVP_R_Final.txt
47 MV_Probit_Stan_Final.txt https://pasteur.epa.gov/uploads/10.23719/1407576/MV_Probit_Stan_Final.txt
47 MVP_EFLMR_cooc_Final.txt https://pasteur.epa.gov/uploads/10.23719/1407576/MVP_EFLMR_cooc_Final.txt

Tags

  • ecological-risk-mapping
  • co-occurrence-models
  • bayesian-statistics
  • r-code
  • stan-code
  • co-occurrence-model
  • ecological-exposure-assessment
  • water-chemistry-bioassessment-data
  • co-occurrence-model-predictions
  • fish-community-bioassessment-data
  • east-fork-little-miami-river-watershed-data

Topics

Categories