Data and code files for co-occurrence modeling project

Description

Files included are original data inputs on stream fishes (fish_data_OEPA_2012.csv), water chemistry (OEPA_WATER_2012.csv), geographic data (NHD_Plus_StreamCat); modeling files for generating predictions from the original data, including the R code (MVP_R_Final.txt) and Stan code (MV_Probit_Stan_Final.txt); and the model output file containing predictions for all NHDPlus catchments in the East Fork Little Miami River watershed (MVP_EFLMR_cooc_Final).

This dataset is associated with the following publication:
Martin, R., E. Waits, and C. Nietch. Empirically-based modeling and mapping to consider the co-occurrence of ecological receptors and stressors. SCIENCE OF THE TOTAL ENVIRONMENT. Elsevier BV, AMSTERDAM, NETHERLANDS, 613(614): 1228-1239, (2018).

Resources

Name Format Description Link
fish_data_OEPA_2012.csv XLS fish_data_OEPA_2012.csv Open resource
MVP_EFLMR_cooc_Final.txt Text MVP_EFLMR_cooc_Final.txt Open resource
MVP_R_Final.txt Text MVP_R_Final.txt Open resource
MV_Probit_Stan_Final.txt Text MV_Probit_Stan_Final.txt Open resource
NHD_Plus_StreamCat.csv XLS NHD_Plus_StreamCat.csv Open resource
OEPA_WATER_2012.csv XLS OEPA_WATER_2012.csv Open resource

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