Description
CottonGen has an instance of the JBrowse genome browser for viewing genome data. A list of the genomes available in CottonGen can be accessed by clicking the JBrowse link in the Tools menu.
Whole Genomes
- 2019-03: Gossypium barbadense AD2 Hai-7124 genome ZJU v1.1_a1
- 2018-12: Gossypium barbadense AD2 3-79 genome HAU v2_a1
- 2015-12: Gossypium barbadense AD2 3-79 genome HAU v1_a1
- 2019-03: Gossypium hirsutum AD1 genome ZJU-Improved v2.1_a1
- 2018-12: Gossypium hirsutum AD1 genome HAU v1_a1
- 2017-09: Gossypium hirsutum AD1 genome TX-JGI v1.1_a1
- 2015-04: Gossypium hirsutum AD1 genome NAU-NBI v1.1_a1.1
- 2015-04: Gossypium hirsutum AD1 genome CGP-BGI v1_a1
- 2018-05: Gossypium arboreum A2 genome CRI-Updated v1_a1
- 2014-05: Gossypium arboreum A2 genome CGP-BGI v2_a1
- 2012-12: Gossypium raimondii D5 genome JGI v2_a2.1
- 2012-08: Gossypium raimondii D5 genome CGP-BGI v1_a1
Chloroplast Genomes
- Gossypium arboreum chloroplast
- Gossypium barbadense chloroplast
- Gossypium hirsutum chloroplast
- Gossypium raimondii chloroplast
Please watch the JBrowse tutorial for more details about how to navigate and use JBrowse.
Resources in this dataset:
Resource Title: CottonGen JBrowse and User Manual.
File Name: Web Page, url: https://www.cottongen.org/node/8287911
CottonGen has an instance of the JBrowse genome browser for viewing genome data. A list of the genomes available in CottonGen can be accessed by clicking the JBrowse link in the Tools menu. Whole Genomes * 2019-03: Gossypium barbadense AD2 Hai-7124 genome ZJU v1.1_a1 * 2018-12: Gossypium barbadense AD2 3-79 genome HAU v2_a1 * 2015-12: Gossypium barbadense AD2 3-79 genome HAU v1_a1 * 2019-03: Gossypium hirsutum AD1 genome ZJU-Improved v2.1_a1 * 2018-12: Gossypium hirsutum AD1 genome HAU v1_a1 * 2017-09: Gossypium hirsutum AD1 genome TX-JGI v1.1_a1 * 2015-04: Gossypium hirsutum AD1 genome NAU-NBI v1.1_a1.1 * 2015-04: Gossypium hirsutum AD1 genome CGP-BGI v1_a1 * 2018-05: Gossypium arboreum A2 genome CRI-Updated v1_a1 * 2014-05: Gossypium arboreum A2 genome CGP-BGI v2_a1 * 2012-12: Gossypium raimondii D5 genome JGI v2_a2.1 * 2012-08: Gossypium raimondii D5 genome CGP-BGI v1_a1 Chloroplast Genomes * Gossypium arboreum chloroplast * Gossypium barbadense chloroplast * Gossypium hirsutum chloroplast * Gossypium raimondii chloroplast Please watch the JBrowse tutorial for more details about how to navigate and use JBrowse.
Resources
| Name | Format | Description | Link |
|---|---|---|---|
| 21 | https://www.cottongen.org/node/8287911 |
Tags
- chloroplast
- cottongen
- ars
- cotton
- genomics
- online-database
- data-gov
- np301