Description
The CottonGen CottonCyc Pathways Database, part of CottonGen, supports searching and browsing the following CottonCyc databases:
- Cyc pathways for JGI v2.0 G. raimondii D5 genome assembly
This Cyc database was constructed using PathwayTools version 20.0 using the gene models from the JGI v2.0 D5 genome assembly of Gossypium raimondii. There has been no manual curation of this Cyc database. Pathway predictions were made using PathwayTools and in-silico v2.1 annotations as provided by JGI.
- Cyc pathways for CGP-BGI v1.0 G. hirsutum AD1 genome assembly
This Cyc database was constructed using PathwayTools version 20.0 using the gene models from the CGP-BGI v1.0 AD1 genome assembly of Gossypium hirsutum. There has been no manual curation of this Cyc database. Pathway predictions were made using PathwayTools and in-silico v1.0 annotations as provided by CGP-BGI.
Search parameters include genes, proteins, RNAs, compounds, reactions, pathways, growth media, and BLAST search.
Resources in this dataset:
Resource Title: Website Pointer to CottonGen CottonCyc Pathways Database.
File Name: Web Page, url: http://ptools.cottongen.org/
Resources
| Name | Format | Description | Link |
|---|---|---|---|
| 21 | http://ptools.cottongen.org/ |
Tags
- ncbi-blast
- cottondb
- gbrowse
- cottongen
- ars
- cotton-marker-database
- cmap
- tripal-database
- online-database
- data-gov
- np301