Description
The data described here result from benthic photo-quadrat surveys conducted along transects at stratified random sites (StRS) and fixed sites surveyed in the Northwestern Hawaiian Islands (NWHI) and the Main Hawaiian Islands (MHI) during bleaching event in 2019. This benthic cover dataset follows a typical benthic image analysis, but includes options for bleaching in imagery annotations. Benthic habitat imagery was quantitatively analyzed using the web-based annotation tool CoralNet (Beijbom et al. 2016) with the addition of codes for bleaching of hard coral. In general, images are analyzed to produce three functional group levels of benthic cover: Tier 1 (e.g., hard coral, soft coral, macroalgae, turf algae, etc.), Tier 2 (e.g., Hard Coral = massive, branching, foliose, encrusting, etc.; Macroalgae = upright macroalgae, encrusting macroalgae, bluegreen macroalgae, and Halimeda, etc.), and Tier 3 (e.g., Hard Coral = Astreopora sp, Favia sp, Pocillopora, etc.; Macroalgae = Caulerpa sp, Dictyosphaeria sp, Padina sp, etc.). For each category of hard coral, a bleached and non-bleached option existed during analysis to facilitate the collection of coral bleaching percent cover data.
In the Main Hawaiian Islands (MHI) and some sites in the Northwestern Hawaiian Islands (NWHI), a StRS design was employed to select random sites. The survey domain encompassed the majority of the mapped area of reef and hard bottom habitats in the 0-30 m depth range. The stratification scheme included island, reef zone, and depth in all regions, as well as habitat structure type in the Main Hawaiian Islands. Sampling effort was allocated based on strata area and sites were randomly located within strata. Sites were surveyed using photo-quadrats along transects to collect benthic imagery to ultimately produce estimates of relative abundance (percent cover), frequency of occurrence, benthic community taxonomic composition and relative generic richness.
The StRS design effectively reduces estimate variance through stratification using environmental covariates and by sampling more sites rather than sampling more transects at a site. Therefore, site-level estimates and site to site comparisons should be used with caution.
Surveys conducted in the Main Hawaiian Islands were conducted during shore-based missions and were all StRS, whereas surveys in the Northwestern Hawaiian Islands were performed opportunistically during the regularly scheduled NOAA National Coral Reef Monitoring Program (NCRMP) mission and encompassed StRS as well as fixed sites, which include climate stations and permanent sites
Resources
| Name | Format | Description | Link |
|---|---|---|---|
| FTP | Unknown | These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP). | |
| FTP | Unknown | These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP). | |
| FTP | Unknown | These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP). | |
| FTP | Unknown | These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP). | |
| FTP | Unknown | These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP). | |
| FTP | Unknown | These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP). | |
| FTP | Unknown | These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP). | |
| FTP | Unknown | These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP). | |
| https://doi.org/10.1371/journal.pone.0130312 | Unknown | related journal article | Open resource |
| https://doi.org/10.1371/journal.pone.0130312 | Unknown | related journal article | Open resource |
| https://doi.org/10.1371/journal.pone.0130312 | Unknown | related journal article | Open resource |
| https://doi.org/10.1371/journal.pone.0130312 | Unknown | related journal article | Open resource |
| https://doi.org/10.1371/journal.pone.0130312 | Unknown | related journal article | Open resource |
| Towards Automated Annotation of Benthic Survey Images: Variability of Human Experts and Operational Modes of Automation | Unknown | CoralNet: Beijbom O, Edmunds PJ, Roelfsema C, Smith J, Kline DI, Neal BP, et al. (2015) Towards Automated Annotation of Benthic Survey Images: Variability of Human Experts and Operational Modes of Automation. Edited by Chaolun Allen Chen. PLoS ONE 10(7): e0130312. https://doi.org/10.1371/journal.pone.0130312 | Open resource |
| https://doi.org/10.1371/journal.pone.0130312 | Unknown | related journal article | Open resource |
| https://doi.org/10.1371/journal.pone.0130312 | Unknown | related journal article | Open resource |
| https://doi.org/10.25923/ws5s-km69 | Unknown | related journal article | Open resource |
| https://doi.org/10.25923/ws5s-km69 | Unknown | related journal article | Open resource |
| https://doi.org/10.25923/ws5s-km69 | Unknown | related journal article | Open resource |
| https://doi.org/10.25923/ws5s-km69 | Unknown | related journal article | Open resource |
| Ecosystem Sciences Division Standard Operating Procedures: Data Collection for Rapid Ecological Assessment Benthic Surveys, 2019 Update | Unknown | Coral Survey Standard Operating Procedure: Winston W, Couch C, Huntingon B, Vargas-Angel B. 2020. Ecosystem Sciences Division standard operating procedures: data collection for rapid ecological assessment benthic surveys, 2019 update. NOAA Tech. Memo. NMFS-PIFSC-96, 56 p. https://doi.org/10.25923/ws5s-km69 | Open resource |
| https://doi.org/10.25923/ws5s-km69 | Unknown | related journal article | Open resource |
| https://doi.org/10.25923/ws5s-km69 | Unknown | related journal article | Open resource |
| https://doi.org/10.25923/ws5s-km69 | Unknown | related journal article | Open resource |
| https://doi.org/10.7289/v5/ar-pifsc-h-17-02 | Unknown | related journal article | Open resource |
| https://doi.org/10.7289/v5/ar-pifsc-h-17-02 | Unknown | related journal article | Open resource |
| https://doi.org/10.7289/v5/ar-pifsc-h-17-02 | Unknown | related journal article | Open resource |
| https://doi.org/10.7289/v5/ar-pifsc-h-17-02 | Unknown | related journal article | Open resource |
| https://doi.org/10.7289/v5/ar-pifsc-h-17-02 | Unknown | related journal article | Open resource |
| https://doi.org/10.7289/v5/ar-pifsc-h-17-02 | Unknown | related journal article | Open resource |
| https://doi.org/10.7289/v5/ar-pifsc-h-17-02 | Unknown | related journal article | Open resource |
| https://doi.org/10.7289/V5/AR-PIFSC-H-17-02 | Unknown | Image Analysis Standard Operating Procedure: Lozada-Misa P, Schumacher BD, Vargas-Angel B. 2017. Analysis of benthic survey images via CoralNet : a summary of standard operating procedures and guidelines. Pacific Islands Fisheries Science Center, PIFSC Administrative Report, H-17-02, 169 p. https://doi.org/10.7289/V5/AR-PIFSC-H-17-02 | Open resource |
| GCMD Keyword Forum Page | Unknown | Global Change Master Directory (GCMD). 2025. GCMD Keywords, Version 21. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords | Open resource |
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| https://www.fisheries.noaa.gov/inport/item/59195 | Unknown | InPort Metadata Record | Open resource |
| https://www.fisheries.noaa.gov/inport/item/59195 | Unknown | InPort Metadata Record | Open resource |
| https://www.fisheries.noaa.gov/inport/item/59195 | Unknown | InPort Metadata Record | Open resource |
| https://www.fisheries.noaa.gov/inport/item/59195 | Unknown | InPort Metadata Record | Open resource |
| https://www.fisheries.noaa.gov/inport/item/59195 | Unknown | InPort Metadata Record | Open resource |
| https://www.fisheries.noaa.gov/inport/item/59195 | Unknown | InPort Metadata Record | Open resource |
| https://www.fisheries.noaa.gov/inport/item/59195 | Unknown | InPort Metadata Record | Open resource |
| https://www.fisheries.noaa.gov/inport/item/59195 | Unknown | InPort Metadata Record | Open resource |
| NCEI Dataset Landing Page | Unknown | Navigate directly to the URL for a descriptive web page with download links. | Open resource |
| NCEI Dataset Landing Page | Unknown | Navigate directly to the URL for a descriptive web page with download links. | Open resource |
| NCEI Dataset Landing Page | Unknown | Navigate directly to the URL for a descriptive web page with download links. | Open resource |
| NCEI Dataset Landing Page | Unknown | Navigate directly to the URL for a descriptive web page with download links. | Open resource |
| NCEI Dataset Landing Page | Unknown | Navigate directly to the URL for a descriptive web page with download links. | Open resource |
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| NCEI Contact Information | Unknown | Information for contacts at NCEI. | Open resource |
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| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
| NOAA Pacific Islands Fisheries Science Center, Ecosystem Sciences Division website | Unknown | Institution web page | Open resource |
Tags
- 31283
- algae
- algal cover
- aquatic habitat
- belt transect
- benthic
- benthic biology
- benthic habitat
- benthos analysis
- biosphere
- bleaching
- blue-green algae
- central pacific ocean
- coastal processes
- coral
- coral communities
- coral cover
- coral diseases
- coralnet
- coral reef conservation program (crcp)
- coral reef ecology
- coral reef ecosystem division
- coral reef ecosystem program
- coral reefs
- corals
- country/territory
- cred
- crep
- crustose coralline algae
- earth science
- ecosystem sciences division
- encrusting macroalgae
- esd
- french frigate shoals (24n166w0001)
- hard coral cover
- hard coral cover live percentage
- hawaii
- hawaii (21n160w0000)
- hawaiian islands
- hawaiian islands (21n157w0027)
- hawai'i coral bleaching assessment and analysis
- hawaii island
- hawaii island (19n155w0003)
- honolulu
- in situ biological
- kure atoll (28n178w0001)
- lanai island
- lanai island (20n156w0002)
- linear transect (point)
- lisianski island (25n173w0001)
- macroinvertebrates
- marine biology
- marine invertebrates
- marine plants
- maui
- maui island
- maui island (20n156w0004)
- microbiota
- mollusks
- n4cde7
- national coral reef monitoring program (ncrmp)
- northwestern hawaiian islands
- northwestern hawaiian islands (28n178w0000)
- numeric data sets
- oahu (21n157w0003)
- oahu island
- ocean basin
- oceanography
- oceans
- octocoral cover
- pacific islands fisheries science center
- pacific ocean
- pacific reef and assessment monitoring program (pacific ramp - noaa/nmfs/cred)
- papahanaumokuakea marine national monument
- pearl and hermes reef (27n176w0001)
- photograph analysis
- photographic analysis
- pifsc
- quadrat monitoring
- rapid assessment studies
- reef habitat
- reef monitoring and assessment
- seagrass
- sponges
- transect monitoring
- tridacna
- turf algae
- united states of america
- vegetation
- zoology