Description
The raw sequence reads have been submitted to the NCBI Sequence Read Archive (SRA) under the BioProject PRJNA961987 with the following BioSample numbers: SAMN34376234, SAMN34376235, SAMN34376236, SAMN34376237, SAMN34376238, SAMN34376239, SAMN34376240, SAMN34376241, SAMN34376242, SAMN34376243, SAMN34376244, SAMN34376245, SAMN34376246, SAMN34376247, SAMN34376248, SAMN34376249, SAMN34376250, SAMN34376251, SAMN34376252, SAMN34376253, SAMN34376254, SAMN34376255, and SAMN34376256.
An abundance matrix (Table_taxonomy.xlsx) contains rows as taxonomic lineage, columns as samples, and entries representing the abundance of each lineage as a number of reads and percentage of all reads obtained for each individual location and residential activity.
A table (Table_water_quality_parameters.xlsx) contains rows as residential activity with date sampled, columns as Temp (°C), Free Chlorine (Cl2/L), pH, L. pneumophila, M. intracellulare, P. aeruginosa, and V. vermiformis for each HPS section.
This dataset is associated with the following publication:
Gomez-Alvarez, V., H. Ryu, M. Tang, M. McNeely, C. Muhlen, M. Urbanic, D. Williams, D. Lytle, and L. Boczek. Assessing residential activity in a home plumbing system simulator: monitoring the occurrence and relationship of major opportunistic pathogens and phagocytic amoebas. Frontiers in Microbiology. Frontiers, Lausanne, SWITZERLAND, 14: 1260460, (2023).
Resources
| Name | Format | Description | Link |
|---|---|---|---|
| Table_taxonomy.xlsx | XLS | Table_taxonomy.xlsx | Open resource |
| Table_water_quality_parameters.xlsx | XLS | Table_water_quality_parameters.xlsx | Open resource |
| https://www.ncbi.nlm.nih.gov/biosample/SAMN34376234 | Unknown | Open resource | |
| https://www.ncbi.nlm.nih.gov/biosample/SAMN34376235 | Unknown | Open resource | |
| https://www.ncbi.nlm.nih.gov/biosample/SAMN34376236 | Unknown | Open resource | |
| https://www.ncbi.nlm.nih.gov/biosample/SAMN34376237 | Unknown | Open resource | |
| https://www.ncbi.nlm.nih.gov/biosample/SAMN34376238 | Unknown | Open resource | |
| https://www.ncbi.nlm.nih.gov/biosample/SAMN34376239 | Unknown | Open resource | |
| https://www.ncbi.nlm.nih.gov/biosample/SAMN34376240 | Unknown | Open resource | |
| https://www.ncbi.nlm.nih.gov/biosample/SAMN34376241 | Unknown | Open resource | |
| https://www.ncbi.nlm.nih.gov/biosample/SAMN34376242 | Unknown | Open resource | |
| https://www.ncbi.nlm.nih.gov/biosample/SAMN34376243 | Unknown | Open resource | |
| https://www.ncbi.nlm.nih.gov/biosample/SAMN34376244 | Unknown | Open resource | |
| https://www.ncbi.nlm.nih.gov/biosample/SAMN34376245 | Unknown | Open resource | |
| https://www.ncbi.nlm.nih.gov/biosample/SAMN34376246 | Unknown | Open resource | |
| https://www.ncbi.nlm.nih.gov/biosample/SAMN34376247 | Unknown | Open resource | |
| https://www.ncbi.nlm.nih.gov/biosample/SAMN34376248 | Unknown | Open resource | |
| https://www.ncbi.nlm.nih.gov/biosample/SAMN34376249 | Unknown | Open resource | |
| https://www.ncbi.nlm.nih.gov/biosample/SAMN34376250 | Unknown | Open resource | |
| https://www.ncbi.nlm.nih.gov/biosample/SAMN34376251 | Unknown | Open resource | |
| https://www.ncbi.nlm.nih.gov/biosample/SAMN34376252 | Unknown | Open resource | |
| https://www.ncbi.nlm.nih.gov/biosample/SAMN34376253 | Unknown | Open resource | |
| https://www.ncbi.nlm.nih.gov/biosample/SAMN34376254 | Unknown | Open resource | |
| https://www.ncbi.nlm.nih.gov/biosample/SAMN34376255 | Unknown | Open resource | |
| https://www.ncbi.nlm.nih.gov/biosample/SAMN34376256 | Unknown | Open resource |