Assessing cryptic reef diversity of colonizing marine invertebrates using autonomous reef monitoring structures (ARMS) deployed at coral reef sites in Timor-Leste from 2012-10-15 to 2014-10-09 (NCEI Accession 0169338)

Description

The data described here, including photographs, genetic sequences, and specimen information, were collected by the NOAA Coral Reef Ecosystem Program (CREP) from Autonomous Reef Monitoring Structures, or ARMS, moored for two years at fixed climate survey sites located on hard bottom shallow water (< 15 m) habitats in Timor-Leste. Climate sites were established in Timor-Leste in October 2012 to establish ecological baselines for climate change by measuring multiple features of the coral reef environment (in addition to the data described herein) over time. Three ARMS units were typically deployed by SCUBA divers at each survey site. Each ARMS unit, constructed in-house by CREP, consisted of 23 cm x 23 cm gray, type 1 PVC plates stacked in alternating series of 4 open and 4 obstructed layers and attached to a base plate of 35 cm x 45 cm, which was affixed to the reef. Upon recovery, each ARMS unit was encapsulated, brought to the surface, and disassembled and processed. Disassembled plates were photographed to document recruited sessile organisms, scraped clean and preserved in 95% ethanol for DNA processing. Recruited motile organisms were sieved into 3 size fractions: 2 mm, 500 µm, and 100 µm. The 500 µm and 100 µm fractions were bulked and also preserved in 95% ethanol for DNA processing. The 2 mm fraction was sorted into morphospecies, photographed, and identified to the lowest taxonomic identification possible. The plate photographs, sequences generated from the DNA metabarcoding of the scrapings and the 500- and 100-µm fractions, specimen photographs, and specimen identifications are included in the ARMS dataset. The data can be accessed online via the NOAA National Centers for Environmental Information (NCEI) Ocean Archive. ARMS are used by CREP to assess and monitor cryptic reef diversity across the Pacific. Developed in collaboration with the Census of Marine Life (CoML) Census of Coral Reef Ecosystems (CReefs), ARMS are designed to mimic the structural complexity of a reef and attract/collect colonizing marine invertebrates. The key innovation of the ARMS method is that biodiversity is sampled over precisely the same surface area in the exact same manner. Thus, the use of ARMS is a systematic, consistent, and comparable method for monitoring the marine cryptobiota community over time.

Resources

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0 Information for contacts at NCEI. https://www.ncei.noaa.gov/contact
0 Navigate directly to the URL for data access and direct download. https://www.ncei.noaa.gov/archive/accession/download/169338
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0 Information for contacts at NCEI. https://www.ncei.noaa.gov/contact
0 InPort Metadata Record https://www.fisheries.noaa.gov/inport/item/46159
33 PIFSC Special Publication, SP-17-02 https://library.oarcloud.noaa.gov/noaa_documents.lib/NMFS/PIFSC/PIFSC_special_publication/SP-17-002.pdf
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0 NOAA Central Library: Related document https://doi.org/10.7289/v5/sp-pifsc-17-002
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0 Navigate directly to the URL for a descriptive web page with download links. https://www.ncei.noaa.gov/archive/accession/oas/169338
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0 Navigate directly to the URL for a descriptive web page with download links. https://www.ncei.noaa.gov/archive/accession/oas/169338
0 Navigate directly to the URL for data access and direct download. https://www.ncei.noaa.gov/archive/accession/download/169338
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0 These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP). ftp://ftp-oceans.ncei.noaa.gov/nodc/archive/arc0115/0169338/
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0 Navigate directly to the URL for data access and direct download. https://www.ncei.noaa.gov/archive/accession/download/169338
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0 InPort Metadata Record https://www.fisheries.noaa.gov/inport/item/46159
0 PIFSC Special Publication, SP-17-02 https://doi.org/10.7289/v5/sp-pifsc-17-002
0 NOAA Central Library: Related document https://doi.org/10.7289/v5/sp-pifsc-17-002
0 Navigate directly to the URL for a descriptive web page with download links. https://www.ncei.noaa.gov/archive/accession/0169338
0 Navigate directly to the URL for a descriptive web page with download links. https://www.ncei.noaa.gov/archive/accession/oas/169338
0 Navigate directly to the URL for data access and direct download. https://www.ncei.noaa.gov/archive/accession/download/169338
0 These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP). ftp://ftp-oceans.ncei.noaa.gov/nodc/archive/arc0115/0169338/
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0 InPort Metadata Record https://www.fisheries.noaa.gov/inport/item/46159
0 PIFSC Special Publication, SP-17-02 https://doi.org/10.7289/v5/sp-pifsc-17-002
0 NOAA Central Library: Related document https://doi.org/10.7289/v5/sp-pifsc-17-002
0 InPort Metadata Record https://www.fisheries.noaa.gov/inport/item/46159
0 NOAA Central Library: Related document https://doi.org/10.7289/v5/sp-pifsc-17-002
0 Navigate directly to the URL for a descriptive web page with download links. https://www.ncei.noaa.gov/archive/accession/0169338
0 Navigate directly to the URL for a descriptive web page with download links. https://www.ncei.noaa.gov/archive/accession/oas/169338
0 Information for contacts at NCEI. https://www.ncei.noaa.gov/contact
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0 InPort Metadata Record https://www.fisheries.noaa.gov/inport/item/46159
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0 NOAA Central Library: Related document https://doi.org/10.7289/v5/sp-pifsc-17-002
0 Navigate directly to the URL for data access and direct download. https://www.ncei.noaa.gov/archive/accession/download/169338
0 These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP). ftp://ftp-oceans.ncei.noaa.gov/nodc/archive/arc0115/0169338/
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0 Navigate directly to the URL for a descriptive web page with download links. https://www.ncei.noaa.gov/archive/accession/0169338
0 Navigate directly to the URL for a descriptive web page with download links. https://www.ncei.noaa.gov/archive/accession/oas/169338
0 Navigate directly to the URL for data access and direct download. https://www.ncei.noaa.gov/archive/accession/download/169338
0 These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP). ftp://ftp-oceans.ncei.noaa.gov/nodc/archive/arc0115/0169338/
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0 Navigate directly to the URL for a descriptive web page with download links. https://www.ncei.noaa.gov/archive/accession/oas/169338
0 Navigate directly to the URL for data access and direct download. https://www.ncei.noaa.gov/archive/accession/download/169338
0 These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP). ftp://ftp-oceans.ncei.noaa.gov/nodc/archive/arc0115/0169338/
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0 Institution web page http://www.pifsc.noaa.gov/cred
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0 Navigate directly to the URL for a descriptive web page with download links. https://www.ncei.noaa.gov/archive/accession/0169338
0 Global Change Master Directory (GCMD). 2025. GCMD Keywords, Version 21. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords
0 Navigate directly to the URL for a descriptive web page with download links. https://www.ncei.noaa.gov/archive/accession/0169338
0 Navigate directly to the URL for data access and direct download. https://www.ncei.noaa.gov/archive/accession/download/169338
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0 InPort Metadata Record https://www.fisheries.noaa.gov/inport/item/46159
0 PIFSC Special Publication, SP-17-02 https://doi.org/10.7289/v5/sp-pifsc-17-002
0 NOAA Central Library: Related document https://doi.org/10.7289/v5/sp-pifsc-17-002
0 Navigate directly to the URL for a descriptive web page with download links. https://www.ncei.noaa.gov/archive/accession/oas/169338
0 These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP). ftp://ftp-oceans.ncei.noaa.gov/nodc/archive/arc0115/0169338/
0 Global Change Master Directory (GCMD). 2025. GCMD Keywords, Version 21. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords
0 Navigate directly to the URL for a descriptive web page with download links. https://www.ncei.noaa.gov/archive/accession/0169338
0 Navigate directly to the URL for a descriptive web page with download links. https://www.ncei.noaa.gov/archive/accession/oas/169338
0 Navigate directly to the URL for data access and direct download. https://www.ncei.noaa.gov/archive/accession/download/169338
0 These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP). ftp://ftp-oceans.ncei.noaa.gov/nodc/archive/arc0115/0169338/
0 Information for contacts at NCEI. https://www.ncei.noaa.gov/contact
0 Institution web page http://www.pifsc.noaa.gov/cred
0 Institution web page http://www.pifsc.noaa.gov/cred
0 Institution web page https://www.pifsc.noaa.gov/ecosystem_sciences/
0 Institution web page http://www.pifsc.noaa.gov/cred
0 Institution web page https://www.pifsc.noaa.gov/ecosystem_sciences/
0 Institution web page http://www.pifsc.noaa.gov/cred
0 Information for contacts at NCEI. https://www.ncei.noaa.gov/contact
0 Global Change Master Directory (GCMD). 2025. GCMD Keywords, Version 21. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords
0 Global Change Master Directory (GCMD). 2025. GCMD Keywords, Version 21. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords
0 Global Change Master Directory (GCMD). 2025. GCMD Keywords, Version 21. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords
0 Global Change Master Directory (GCMD). 2025. GCMD Keywords, Version 21. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords
0 InPort Metadata Record https://www.fisheries.noaa.gov/inport/item/46159
0 PIFSC Special Publication, SP-17-02 https://doi.org/10.7289/v5/sp-pifsc-17-002
0 NOAA Central Library: Related document https://doi.org/10.7289/v5/sp-pifsc-17-002
0 InPort Metadata Record https://www.fisheries.noaa.gov/inport/item/46159
0 PIFSC Special Publication, SP-17-02 https://doi.org/10.7289/v5/sp-pifsc-17-002
0 Navigate directly to the URL for a descriptive web page with download links. https://www.ncei.noaa.gov/archive/accession/0169338
0 Navigate directly to the URL for a descriptive web page with download links. https://www.ncei.noaa.gov/archive/accession/oas/169338
0 Navigate directly to the URL for data access and direct download. https://www.ncei.noaa.gov/archive/accession/download/169338
0 These data are available through the File Transfer Protocol (FTP). FTP is no longer supported by most internet browsers. You may copy and paste the FTP link to the data into an FTP client (e.g., FileZilla or WinSCP). ftp://ftp-oceans.ncei.noaa.gov/nodc/archive/arc0115/0169338/
0 Information for contacts at NCEI. https://www.ncei.noaa.gov/contact
0 Institution web page http://www.pifsc.noaa.gov/cred
0 Institution web page http://www.pifsc.noaa.gov/cred
0 Institution web page https://www.pifsc.noaa.gov/ecosystem_sciences/
0 Institution web page http://www.pifsc.noaa.gov/cred
0 Institution web page https://www.pifsc.noaa.gov/ecosystem_sciences/
0 Institution web page http://www.pifsc.noaa.gov/cred
0 Information for contacts at NCEI. https://www.ncei.noaa.gov/contact
0 Global Change Master Directory (GCMD). 2025. GCMD Keywords, Version 21. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords
0 Global Change Master Directory (GCMD). 2025. GCMD Keywords, Version 21. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords
0 Global Change Master Directory (GCMD). 2025. GCMD Keywords, Version 21. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords
0 Global Change Master Directory (GCMD). 2025. GCMD Keywords, Version 21. Greenbelt, MD: Earth Science Data and Information System, Earth Science Projects Division, Goddard Space Flight Center (GSFC), National Aeronautics and Space Administration (NASA). URL (GCMD Keyword Forum Page): https://forum.earthdata.nasa.gov/app.php/tag/GCMD+Keywords https://forum.earthdata.nasa.gov/app.php/tag/GCMD%2BKeywords
0 NOAA Central Library: Related document https://doi.org/10.7289/v5/sp-pifsc-17-002

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