Angus Sequence Data: Animal 29443

Description

Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.

The National Animal Germplasm Program has germplasm for this animal, with the repository number 29443.

There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset. In the diagram, the two reads would correspond to read 1 and read 3.

Resources in this dataset:

tar file containing 14 files. The files are:

  • RAPiD-Genomics_F112_CSU_136201_P001_WB09_i5-515_i7-117_S21_L003_R1_001.fastq.gz
  • RAPiD-Genomics_F112_CSU_136201_P001_WB09_i5-515_i7-117_S21_L003_R2_001.fastq.gz
  • RAPiD-Genomics-F113-CSU-136201-P001-WB09-i5-515-i7-117_S157_L002_R1_001.fastq.gz
  • RAPiD-Genomics-F113-CSU-136201-P001-WB09-i5-515-i7-117_S157_L002_R2_001.fastq.gz
  • RAPiD-Genomics-F113-CSU-136201-P001-WB09-i5-515-i7-117_S21_L001_R1_001.fastq.gz
  • RAPiD-Genomics-F113-CSU-136201-P001-WB09-i5-515-i7-117_S21_L001_R2_001.fastq.gz
  • RAPiD-Genomics-F114-CSU-136201-P001-WB09-i5-515-i7-117_S21_L003_R1_001.fastq.gz
  • RAPiD-Genomics-F114-CSU-136201-P001-WB09-i5-515-i7-117_S21_L003_R2_001.fastq.gz
  • RAPiD-Genomics_F115_CSU_136201_P001_WB09_i5-515_i7-117_S21_L001_R1_001.fastq.gz
  • RAPiD-Genomics_F115_CSU_136201_P001_WB09_i5-515_i7-117_S21_L001_R2_001.fastq.gz
  • RAPiD-Genomics_F115_CSU_136201_P001_WB09_i5-515_i7-117_S21_L002_R1_001.fastq.gz
  • RAPiD-Genomics_F115_CSU_136201_P001_WB09_i5-515_i7-117_S21_L002_R2_001.fastq.gz
  • RAPiD-Genomics_F116_CSU_136201_P001_WB09_i5-515_i7-117_S376_L002_R1_001.fastq.gz
  • RAPiD-Genomics_F116_CSU_136201_P001_WB09_i5-515_i7-117_S376_L002_R2_001.fastq.gz


Resources

Name Format Description Link
21 https://app.globus.org/file-manager?origin_id=904c2108-90cf-11e8-9672-0a6d4e044368&origin_path=%2FLTS%2FADCdatastorage%2FNAL%2Fpublished%2Fnode32129%2F
21 https://app.globus.org/file-manager?destination_id=e5391440-1d5e-11ec-a0a0-6b21ca6daf73&destination_path=%2Fnode32129%2F
21 https://app.globus.org/file-manager?origin_id=1e5031de-bb2d-4217-8f35-eda23529faa4&origin_path=%2Fnode32129%2F

Tags

  • cryopreservation
  • ars
  • animals
  • genetic-diversity
  • dna-sequence
  • grin
  • np101
  • germplasm
  • data-gov

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Categories