Description
The data in this repository is to provide the scripts used in the assembly of the Anastrepha ludens genome. It can be used to replicate the steps necessary to assemble the genome described in National Center for Biotechnology Information (NCBI) BioProject: PRJNA803324. This genome assembly workflow was performed on the United States Department of Agriculture (USDA) - SCINet/Mississippi State University High Performance Computing Cluster (HPC) Atlas and installed via Conda.
Resources
| Name | Format | Description | Link |
|---|---|---|---|
| blob.sh | SH | Open resource | |
| hifiasm.sh | SH | Open resource | |
| genomescope2.sh | SH | Open resource | |
| hifiadapterfiltFCS.sh | SH | Open resource | |
| hic_yahs.sh | SH | Open resource | |
| busco5.sh | SH | Open resource |