Description
This dataset contains all data and R codes (R Development Core Team, https://www.R-project.org) used in the following publication: Donati GFA, Parravicini V, Leprieur F, Hagen O, Gaboriau T, Heine C, Kulbicki M, Rolland J, Salamin N, Albouy C, Pellissier L. "A process-based model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted by Ecography in August 2019. When using this data and R scripts the above publication should be cited.
The interaction of habitat dynamics with species dispersal abilities could generate gradients
in species diversity and prevalence of life-history and ecological traits, when the latter are associated with dispersal potential. In this dataset, we use a spatial mechanistic model of speciation, extinction and dispersal, constrained by a dispersal parameter. This model allows to simulate the interplay between reef habitat dynamics over the past 140 million years and dispersal, shaping lineage diversification history and global assemblage composition of over 6000 tropical reef fish species. Global trait distribution data of tropical reef fish are used to evaluate the congruence between simulations and observations.
Resources
| Name | Format | Description | Link |
|---|---|---|---|
| Input for the Global distribution maps for proportions of species richness for (a) simulated dispersal parameter value (b) observed dispersal-related traits | CSV | Open resource | |
| Input for the Global distribution maps for proportions of species richness for (a) simulated dispersal parameter value (b) observed dispersal-related traits | CSV | Open resource | |
| Supplementary material Appendix 1 Figures | Unknown | Open resource | |
| Supplementary material Appendix 1 Figures | Unknown | Open resource | |
| Simulated rates of speciation and extinction under a range of dispersal parameters. | Unknown | Open resource | |
| Simulated rates of speciation and extinction under a range of dispersal parameters. | Unknown | Open resource | |
| Global simulated distribution of species under a range of dispersal parameter values | TXT | Open resource | |
| Global simulated distribution of species under a range of dispersal parameter values | TXT | Open resource | |
| Coral reef grid cells (shape, dbf, etc. files) | ZIP | Open resource | |
| Coral reef grid cells (shape, dbf, etc. files) | ZIP | Open resource | |
| Unknown | Open resource | ||
| Unknown | Open resource | ||
| Global coast files from https://www.ngdc.noaa.gov/mgg/shorelines/gshhs.html | ZIP | Open resource | |
| Global coast files from https://www.ngdc.noaa.gov/mgg/shorelines/gshhs.html | ZIP | Open resource | |
| Tropical reef fish trait data | CSV | Open resource | |
| Tropical reef fish trait data | CSV | Open resource | |
| Main text figures | Unknown | Open resource | |
| Main text figures | Unknown | Open resource | |
| Donati et al. main script | Unknown | Open resource | |
| Donati et al. main script | Unknown | Open resource | |
| Functions used in R scripts in: Donati et al. 2019 "A process-based-model supports an association between # dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted in Ecography, August 2019 | Unknown | Open resource | |
| Functions used in R scripts in: Donati et al. 2019 "A process-based-model supports an association between # dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted in Ecography, August 2019 | Unknown | Open resource | |
| Global species distribution of tropical reef fish species | CSV | Open resource | |
| Global species distribution of tropical reef fish species | CSV | Open resource | |
| Dispersal parameter value d per simulation | TXT | Open resource | |
| Dispersal parameter value d per simulation | TXT | Open resource |